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04302015_12_scaffold_4

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Displaying items 1-30 of 291 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_12_scaffold_4_1
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..975
DNA (975bp) protein (325aa)
Secretion protein HlyD family protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XFE1_NOVAD rbh
Multidrug resistance protein A {ECO:0000313|EMBL:KHS46099.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosp
secretion protein HlyD family protein; K03543 multidrug resistance protein A rbh
04302015_12_scaffold_4_2
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

962..2494
DNA (1533bp) protein (511aa)
Drug resistance transporter, EmrB/QacA subfamily n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XFE0_NOVAD rbh
EmrB/QacA family drug resistance transporter; K03446 MFS transporter, DHA2 family, multidrug resistance protein B rbh
Drug resistance transporter, EmrB/QacA subfamily {ECO:0000313|EMBL:ABP64651.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobiu
04302015_12_scaffold_4_3
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2880..3743)
DNA (864bp) protein (288aa)
methenyltetrahydrofolate cyclohydrolase (EC:3.5.4.9); K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] rbh
Bifunctional protein FolD n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XFD9_NOVAD rbh
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosph
04302015_12_scaffold_4_4
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3799..5331)
DNA (1533bp) protein (511aa)
Phosphomannomutase {ECO:0000313|EMBL:KHS46096.1}; EC=5.4.2.8 {ECO:0000313|EMBL:KHS46096.1};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; No
phosphoglucomutase/phosphomannomutase alpha/beta/subunit; K01840 phosphomannomutase [EC:5.4.2.8] rbh
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XFD8_NOVAD rbh
04302015_12_scaffold_4_5
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5566..7287
DNA (1722bp) protein (574aa)
ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XFD7_NOVAD rbh
bacteriocin/lantibiotic ABC transporter; K02021 putative ABC transport system ATP-binding protein rbh
ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain-like protein {ECO:0000313|EMBL:ABP64648.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteob
04302015_12_scaffold_4_6
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7291..8442
DNA (1152bp) protein (384aa)
Multidrug resistance efflux pump-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XFD6_NOVAD
Secretion protein HlyD {ECO:0000313|EMBL:KHS46094.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobiu
multidrug resistance efflux pump-like protein
04302015_12_scaffold_4_7
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8439..9899
DNA (1461bp) protein (487aa)
Outer membrane protein-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XFD5_NOVAD
Outer membrane efflux protein {ECO:0000313|EMBL:KHS46093.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosph
Outer membrane protein-like protein
04302015_12_scaffold_4_8
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10108..10452)
DNA (345bp) protein (115aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z761_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHL25830.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter me
hypothetical protein
04302015_12_scaffold_4_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10975..12078
DNA (1104bp) protein (368aa)
peptidase n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B643F1
putative iron uptake protein
Putative iron uptake protein {ECO:0000313|EMBL:BAK65107.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium
04302015_12_scaffold_4_10
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12075..12269
DNA (195bp) protein (65aa)
Uncharacterized protein {ECO:0000313|EMBL:KGB55659.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis s
hypothetical protein
04302015_12_scaffold_4_11
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12284..14449
DNA (2166bp) protein (722aa)
TonB-dependent receptor-like protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IL46_9SPHN rbh
TonB-dependent receptor-like protein; K02014 iron complex outermembrane recepter protein rbh
TonB-dependent receptor-like protein {ECO:0000313|EMBL:BAK65109.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sph
04302015_12_scaffold_4_12
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14638..15417
DNA (780bp) protein (260aa)
Trehalose 6-phosphate phosphatase {ECO:0000256|RuleBase:RU361117}; EC=3.1.3.12 {ECO:0000256|RuleBase:RU361117};; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
haloacid dehalogenase n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B3E1B3
HAD family hydrolase
04302015_12_scaffold_4_13
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15414..17213
DNA (1800bp) protein (600aa)
glucoamylase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E5C789 rbh
Glycoside hydrolase 15-related protein {ECO:0000313|EMBL:EZP56571.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source=
glycoside hydrolase 15-like protein rbh
04302015_12_scaffold_4_14
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17210..18631
DNA (1422bp) protein (474aa)
Alpha,alpha-trehalose-phosphate synthase {ECO:0000313|EMBL:KHS42701.1}; EC=2.4.1.15 {ECO:0000313|EMBL:KHS42701.1};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales
alpha,alpha-trehalose-phosphate synthase (EC:2.4.1.15); K00697 trehalose 6-phosphate synthase [EC:2.4.1.15] rbh
Trehalose 6-phosphate synthase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G877_NOVAD rbh
04302015_12_scaffold_4_15
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18719..20251
DNA (1533bp) protein (511aa)
o-succinylbenzoate--CoA ligase (EC:6.2.1.26)
malonyl-CoA synthase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4E601 rbh
Malonyl-CoA synthase {ECO:0000313|EMBL:KHS46085.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium
04302015_12_scaffold_4_16
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20255..20704)
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B69986
Uncharacterized protein {ECO:0000313|EMBL:KHS45002.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobi
hypothetical protein
04302015_12_scaffold_4_17
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20817..21968
DNA (1152bp) protein (384aa)
Deoxyribodipyrimidine photo-lyase n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QV17_9RHIZ rbh
Deoxyribodipyrimidine photo-lyase {ECO:0000313|EMBL:KHS45003.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Nov
hypothetical protein
04302015_12_scaffold_4_18
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22042..24888
DNA (2847bp) protein (949aa)
Uncharacterized protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V5V0_SPHWW rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABQ67666.1}; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" sour
04302015_12_scaffold_4_19
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24920..25405)
DNA (486bp) protein (162aa)
UPI0003D00591 related cluster n=1 Tax=unknown RepID=UPI0003D00591
TspO and MBR-like protein {ECO:0000313|EMBL:KHS45054.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
TspO and MBR-like protein; K07185 tryptophan-rich sensory protein
04302015_12_scaffold_4_20
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25680..26705
DNA (1026bp) protein (342aa)
Peptidase t2 asparaginase 2 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UPI4_9SPHN
Peptidase t2 asparaginase 2 {ECO:0000313|EMBL:ENY80360.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyx
putative peptidase
04302015_12_scaffold_4_21
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26639..27007)
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WCV9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EIZ78033.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
response regulator receiver protein
04302015_12_scaffold_4_22
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26985..28127)
DNA (1143bp) protein (381aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae;
ATPase n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI0003823421 rbh
integral membrane sensor signal transduction histidine kinase rbh
04302015_12_scaffold_4_23
alpha proteobacterium JLT2015, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28360..29709
DNA (1350bp) protein (450aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium JLT2015 RepID=M2TP00_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:EMD83471.1}; TaxID=1234595 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium JLT2015.;"
hypothetical protein; K07093
04302015_12_scaffold_4_24
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29716..30168)
DNA (453bp) protein (151aa)
ABC transporter n=1 Tax=Sphingomonas sp. LH128 RepID=J8VYY7_9SPHN
ABC transporter {ECO:0000313|EMBL:EJU12656.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.
hemolysin secretion ATP-binding protein; K06147 ATP-binding cassette, subfamily B, bacterial
04302015_12_scaffold_4_25
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30220..30831)
DNA (612bp) protein (204aa)
Putative TetR family transcriptional regulator n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YHU2_9SPHN
Transcriptional regulator of tetR family {ECO:0000313|EMBL:GAO53329.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" so
TetR-family transcriptional regulator
04302015_12_scaffold_4_26
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30835..31983)
DNA (1149bp) protein (383aa)
sterol desaturase (EC:1.14.21.6) rbh
Sterol desaturase n=1 Tax=Novosphingobium sp. AP12 RepID=J2GHQ4_9SPHN rbh
Sterol desaturase {ECO:0000313|EMBL:GAO53328.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium s
04302015_12_scaffold_4_27
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32326..33330)
DNA (1005bp) protein (335aa)
beta-lactamase-like protein n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225ED45 rbh
Beta-lactamase {ECO:0000313|EMBL:EXS69317.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
beta-lactamase-like protein
04302015_12_scaffold_4_28
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33342..35690)
DNA (2349bp) protein (783aa)
TonB-dependent receptor n=1 Tax=Sphingomonas sp. LH128 RepID=J8VIV8_9SPHN
Scaffold8, whole genome shotgun sequence {ECO:0000313|EMBL:KIS31820.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" so
TonB-dependent receptor
04302015_12_scaffold_4_29
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35808..36707
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0H767_9SPHN rbh
Nodulation protein D 2 {ECO:0000313|EMBL:AKH41382.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Alterery
LysR family transcriptional regulator
04302015_12_scaffold_4_30
Hyphomonas sp. BRH_c22, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36721..37719)
DNA (999bp) protein (333aa)
hypothetical protein n=1 Tax=Blastomonas sp. AAP53 RepID=UPI00038039C7
Uncharacterized protein {ECO:0000313|EMBL:KJS37374.1}; TaxID=1629710 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas sp. BRH_
hypothetical protein
Displaying items 1-30 of 291 in total

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