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04302015_12_scaffold_13

Search features with annotation key words

Displaying items 1-30 of 223 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_12_scaffold_13_1
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

93..2123
DNA (2031bp) protein (677aa)
Uncharacterized protein n=1 Tax=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) RepID=B9KV41_RHOSK rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACM03919.1}; TaxID=557760 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaer
04302015_12_scaffold_13_2
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

2150..3091
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI0002F6E1AA rbh
Restriction endonuclease subunit M {ECO:0000313|EMBL:KIF24096.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
hypothetical protein rbh
04302015_12_scaffold_13_3
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3088..4740
DNA (1653bp) protein (551aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CT26_SPHYA rbh
Uncharacterized protein {ECO:0000313|EMBL:EKU74096.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yano
Eco57I restriction endonuclease rbh
04302015_12_scaffold_13_4
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

4733..7294
DNA (2562bp) protein (854aa)
type III restriction endonuclease n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI000317A956 rbh
Restriction endonuclease {ECO:0000313|EMBL:KIF24094.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
hypothetical protein
04302015_12_scaffold_13_5
unknown

Not on your lists

comp(7303..8037)
DNA (735bp) protein (245aa)

This feature has no annotations

04302015_12_scaffold_13_6
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8127..8753)
DNA (627bp) protein (209aa)
hypothetical protein n=1 Tax=Sphingobium chinhatense RepID=UPI000361722E
DeoR-like helix-turn-helix domain protein {ECO:0000313|EMBL:KFG91571.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" sourc
hypothetical protein
04302015_12_scaffold_13_7
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8873..10444
DNA (1572bp) protein (524aa)
Recombinase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GB00_NOVAD rbh
recombinase rbh
Recombinase {ECO:0000313|EMBL:ABD24973.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromatic
04302015_12_scaffold_13_8
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10444..11343
DNA (900bp) protein (300aa)
plasmid stablization protein ParB n=1 Tax=Sphingobium xenophagum RepID=UPI0002F894D7 rbh
Plasmid stablization protein ParB {ECO:0000313|EMBL:KFG91569.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphin
ParB family protein; K03497 chromosome partitioning protein, ParB family rbh
04302015_12_scaffold_13_9
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11336..12298
DNA (963bp) protein (321aa)
RepB plasmid partition n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GAZ8_NOVAD rbh
RepB plasmid partition
RepB plasmid partition {ECO:0000313|EMBL:ABD24975.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobi
04302015_12_scaffold_13_10
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12759..14141)
DNA (1383bp) protein (461aa)
UPI0003CE458F related cluster n=1 Tax=unknown RepID=UPI0003CE458F rbh
UBA/THIF-type NAD/FAD binding domain-containing protein {ECO:0000313|EMBL:AJD43554.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agroba
UBA/THIF-type NAD/FAD binding protein rbh
04302015_12_scaffold_13_11
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14134..15240)
DNA (1107bp) protein (369aa)
Uncharacterized protein n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X456_RHIFR rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AFL50662.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" so
04302015_12_scaffold_13_12
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15327..15695
DNA (369bp) protein (123aa)
Helix-turn-helix domain protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F5U6_9RHIZ
XRE family transcriptional regulator protein {ECO:0000313|EMBL:AJD43552.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium gro
transcriptional regulator
04302015_12_scaffold_13_13
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15695..15868
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X458_RHIFR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL50664.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" so
04302015_12_scaffold_13_14
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15949..16479
DNA (531bp) protein (177aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI00037C45AB
Uncharacterized protein {ECO:0000313|EMBL:AJD43550.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" sour
hypothetical protein
04302015_12_scaffold_13_15
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16664..17917)
DNA (1254bp) protein (418aa)
UPI0003CE1DA6 related cluster n=1 Tax=unknown RepID=UPI0003CE1DA6 rbh
Uncharacterized protein {ECO:0000313|EMBL:EHS51945.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" sour
hypothetical protein rbh
04302015_12_scaffold_13_16
unknown

Not on your lists

comp(18105..18650)
DNA (546bp) protein (182aa)

This feature has no annotations

04302015_12_scaffold_13_17
BJP_08E140C01_10KDA_Sphingomonadales_62_47, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18716..18964)
DNA (249bp) protein (83aa)
Tax=BJP_08E140C01_10KDA_Sphingomonadales_62_47
04302015_12_scaffold_13_18
BJP_08E140C01_10KDA_Sphingomonadales_62_47, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19103..19363)
DNA (261bp) protein (87aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZCW4_9SPHN
hypothetical protein
Tax=BJP_08E140C01_10KDA_Sphingomonadales_62_47
04302015_12_scaffold_13_19
BJP_08E140C01_10KDA_Sphingomonadales_62_47, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19360..20049)
DNA (690bp) protein (230aa)
ParA-like protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z667_9SPHN
cobyrinic acid a,c-diamide synthase
Tax=BJP_08E140C01_10KDA_Sphingomonadales_62_47
04302015_12_scaffold_13_20
BJP_08E140C01_10KDA_Sphingomonadales_62_47, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20124..23186)
DNA (3063bp) protein (1021aa)
TrwC protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZCW2_9SPHN rbh
TrwC protein
Tax=BJP_08E140C01_10KDA_Sphingomonadales_62_47
04302015_12_scaffold_13_21
BJP_08E140C01_10KDA_Sphingomonadales_62_47, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23183..23956)
DNA (774bp) protein (258aa)
Putative uncharacterized protein n=2 Tax=Novosphingobium nitrogenifigens RepID=F1ZCW1_9SPHN
Tax=BJP_08E140C01_10KDA_Sphingomonadales_62_47
04302015_12_scaffold_13_22
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24288..24923)
DNA (636bp) protein (212aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZCW0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD57553.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
04302015_12_scaffold_13_23
BJP_08E140C01_10KDA_Sphingomonadales_62_47, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24920..26098)
DNA (1179bp) protein (393aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B43D1B
Tax=BJP_08E140C01_10KDA_Sphingomonadales_62_47
04302015_12_scaffold_13_24
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27094..37404
DNA (10311bp) protein (3437aa)
hypothetical protein n=3 Tax=Xanthobacteraceae RepID=UPI0003806DF2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAF88633.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulino
04302015_12_scaffold_13_trna_1
unknown

Not on your lists

comp(37552..37625)
DNA (74bp)
transferRNA
04302015_12_scaffold_13_25
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37836..38423
DNA (588bp) protein (196aa)
Metal-dependent phosphohydrolase, HD subdomain n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G918_NOVAD rbh
Metal-dependent phosphohydrolase {ECO:0000313|EMBL:KHS42288.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novo
metal-dependent phosphohydrolase rbh
04302015_12_scaffold_13_26
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38528..40123
DNA (1596bp) protein (532aa)
long-chain-fatty-acid--CoA ligase (EC:2.3.1.86); K00666 fatty-acyl-CoA synthase [EC:6.2.1.-] rbh
AMP-dependent synthetase and ligase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G917_NOVAD rbh
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ABD25656.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="
04302015_12_scaffold_13_27
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40195..40470)
DNA (276bp) protein (92aa)
Histone-like DNA-binding protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G911_NOVAD
histone-like DNA-binding protein; K03530 DNA-binding protein HU-beta
Histone-like DNA-binding protein {ECO:0000313|EMBL:ABD25662.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Nov
04302015_12_scaffold_13_28
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40843..42018
DNA (1176bp) protein (392aa)
Secretion protein HlyD n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G910_NOVAD rbh
Secretion protein HlyD {ECO:0000313|EMBL:KHS44393.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobiu
secretion protein HlyD; K03585 membrane fusion protein rbh
04302015_12_scaffold_13_29
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42025..45162
DNA (3138bp) protein (1046aa)
Hydrophobe/amphiphile efflux-1 HAE1 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G909_NOVAD rbh
Hydrophobe/amphiphile efflux-1 protein {ECO:0000313|EMBL:KHS44392.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source
hydrophobe/amphiphile efflux-1 protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family rbh
Displaying items 1-30 of 223 in total

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