ggKbase home page

04302015_12_scaffold_341

Search features with annotation key words

Displaying items 1-30 of 33 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_12_scaffold_341_1
Erythrobacter longus, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(127..1329)
DNA (1203bp) protein (401aa)
integrase n=1 Tax=Sphingomonas elodea RepID=UPI0002630FFF rbh
Integrase {ECO:0000313|EMBL:KEO89077.1}; TaxID=1044 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter longus.;"
transposase
04302015_12_scaffold_341_trna_2
unknown

Not on your lists

comp(1503..1589)
DNA (87bp)
transferRNA
04302015_12_scaffold_341_2
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1745..2125
DNA (381bp) protein (127aa)
Hemimethylated DNA-binding region protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5F9_NOVAD
hemimethylated DNA-binding region protein; K11940 heat shock protein HspQ
Hemimethylated DNA-binding region protein {ECO:0000313|EMBL:ABD26914.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" so
04302015_12_scaffold_341_3
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2132..3001)
DNA (870bp) protein (290aa)
ABC-2 protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5F8_NOVAD rbh
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphi
hypothetical protein; K09686 antibiotic transport system permease protein rbh
04302015_12_scaffold_341_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3105..3827
DNA (723bp) protein (241aa)
GcrA cell cycle regulator n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI000377A1EC rbh
GcrA cell cycle regulator {ECO:0000313|EMBL:GAO55717.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphin
GcrA cell cycle regulator; K13583 GcrA cell cycle regulator rbh
04302015_12_scaffold_341_5
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3955..5127
DNA (1173bp) protein (391aa)
Diguanylate cyclase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5F6_NOVAD
Diguanylate cyclase {ECO:0000313|EMBL:KHS42569.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium s
diguanylate cyclase; K13590 diguanylate cyclase
04302015_12_scaffold_341_6
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5194..7524)
DNA (2331bp) protein (777aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=109693
polynucleotide phosphorylase (EC:2.7.7.8); K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Polyribonucleotide nucleotidyltransferase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0I5E6_9SPHN rbh
04302015_12_scaffold_341_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7762..8031)
DNA (270bp) protein (90aa)
30S ribosomal protein S15 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=RS15_NOVAD
rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novos
04302015_12_scaffold_341_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8037..8987)
DNA (951bp) protein (317aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylat
tRNA pseudouridine synthase B (EC:4.2.1.70); K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25] rbh
tRNA pseudouridine synthase B n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WKF0_9SPHN
04302015_12_scaffold_341_9
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8984..9685)
DNA (702bp) protein (234aa)
Peptidase M50 n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZAL1_9SPHN rbh
Peptidase M50 {ECO:0000313|EMBL:EGD58352.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrog
peptidase M50
04302015_12_scaffold_341_10
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9682..10233)
DNA (552bp) protein (184aa)
GCN5-related N-acetyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5F1_NOVAD
GCN5-like N-acetyltransferase {ECO:0000313|EMBL:KHS42561.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosph
GCN5-like N-acetyltransferase
04302015_12_scaffold_341_11
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10513..10926
DNA (414bp) protein (138aa)
YceI-like domain protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X1T3_9SPHN
YceI family protein {ECO:0000313|EMBL:KHS42559.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium s
hypothetical protein
04302015_12_scaffold_341_12
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10923..11336)
DNA (414bp) protein (138aa)
Ribosome-binding factor A n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZAL4_9SPHN
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosp
rbfA; ribosome-binding factor A; K02834 ribosome-binding factor A
04302015_12_scaffold_341_13
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11345..11890)
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8SGK3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU11959.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp
hypothetical protein
04302015_12_scaffold_341_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12091..14709)
DNA (2619bp) protein (873aa)
Translation initiation factor IF-2 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=IF2_NOVAD
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" sour
infB; translation initiation factor IF-2; K02519 translation initiation factor IF-2
04302015_12_scaffold_341_15
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14706..15461)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5E6_NOVAD
hypothetical protein; K07742 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD26927.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
04302015_12_scaffold_341_16
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15442..17100)
DNA (1659bp) protein (553aa)
transcription elongation factor NusA n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5E4FC rbh
nusA; transcription elongation factor NusA; K02600 N utilization substance protein A
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novo
04302015_12_scaffold_341_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17104..17688)
DNA (585bp) protein (195aa)
ribosome maturation factor RimP n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B40FFF rbh
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadac
hypothetical protein; K09748 ribosome maturation factor RimP
04302015_12_scaffold_341_18
unknown

Not on your lists

18198..18338
DNA (141bp) protein (47aa)

This feature has no annotations

04302015_12_scaffold_341_19
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18335..18559
DNA (225bp) protein (75aa)
Phage shock protein C, PspC n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5E2_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO56616.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
phage shock protein C, PspC
04302015_12_scaffold_341_20
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18605..19483)
DNA (879bp) protein (293aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZAM1_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO56617.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
hypothetical protein; K09125 hypothetical protein
04302015_12_scaffold_341_trna_1
unknown

Not on your lists

19493..19566
DNA (74bp)
transferRNA
04302015_12_scaffold_341_21
Leishmania major, Leishmania, Kinetoplastida, Eukaryota

Not on your lists

comp(20036..21034)
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=Leishmania major RepID=E9AEK6_LEIMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBZ12659.1}; TaxID=5664 species="Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania.;" source="Leishmania major.;"
04302015_12_scaffold_341_22
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21133..22881)
DNA (1749bp) protein (583aa)
adenylate cyclase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B3A486 rbh
Uncharacterized protein {ECO:0000313|EMBL:KHK89927.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
hypothetical protein rbh
04302015_12_scaffold_341_23
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22902..24830)
DNA (1929bp) protein (643aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WUE3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:GAO39201.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas c
TIR-like domain-containing protein (DUF1863)
04302015_12_scaffold_341_24
Chlorobium phaeobacteroides, Chlorobium, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

24906..27380
DNA (2475bp) protein (825aa)
Lipase, class 3 n=1 Tax=Chlorobium phaeobacteroides (strain DSM 266) RepID=A1BIU7_CHLPD
lipase, class 3
Lipase, class 3 {ECO:0000313|EMBL:ABL66324.1}; TaxID=290317 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium.;" source="Chlorobium phaeobac
04302015_12_scaffold_341_25
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27540..28223
DNA (684bp) protein (228aa)
Putative transmembrane transcriptional regulator (Anti-sigma factor) n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7Z2_NOVAD
transmembrane transcriptional regulator (anti-sigma factor)
Putative transmembrane transcriptional regulator (Anti-sigma factor) {ECO:0000313|EMBL:ABD26031.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonada
04302015_12_scaffold_341_26
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28227..28523)
DNA (297bp) protein (99aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZAN2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD58331.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
hypothetical protein
04302015_12_scaffold_341_27
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28658..30421
DNA (1764bp) protein (588aa)
Kef-type potassium/proton antiporter, CPA2 family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4U6_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO57016.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
sodium/hydrogen exchanger; K03455 monovalent cation:H+ antiporter-2, CPA2 family
04302015_12_scaffold_341_28
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30503..30940
DNA (438bp) protein (146aa)
Transcriptional regulator, MarR family n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZAN4_9SPHN
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EGD58329.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" sourc
MarR family transcriptional regulator
Displaying items 1-30 of 33 in total

View Taxonomy