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04302015_12_scaffold_485

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Displaying 22 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_12_scaffold_485_1
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..1302
DNA (1302bp) protein (434aa)
ATP synthase F0F1 subunit alpha (EC:3.6.3.14); K02111 F-type H+-transporting ATPase subunit alpha [EC:3.6.3.14]
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit a
F0F1 ATP synthase subunit alpha n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6B6E6
04302015_12_scaffold_485_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1360..2232
DNA (873bp) protein (291aa)
ATP synthase F0F1 subunit gamma (EC:3.6.3.14); K02115 F-type H+-transporting ATPase subunit gamma [EC:3.6.3.14]
ATP synthase gamma chain n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=ATPG_NOVAD
ATP synthase gamma chain {ECO:0000256|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; TaxID=1630
04302015_12_scaffold_485_3
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2328..3773
DNA (1446bp) protein (482aa)
ATP synthase F0F1 subunit beta (EC:3.6.3.14); K02112 F-type H+-transporting ATPase subunit beta [EC:3.6.3.14] rbh
ATP synthase subunit beta {ECO:0000255|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000255|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000255|HAMAP-Rule:MF_01347}; F-ATPase subunit bet
ATP synthase subunit beta n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=ATPB_NOVAD rbh
04302015_12_scaffold_485_4
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3897..4154
DNA (258bp) protein (86aa)
atpC; ATP synthase F0F1 subunit epsilon; K02113 F-type H+-transporting ATPase subunit delta [EC:3.6.3.14]; K02114 F-type H+-transporting ATPase subunit epsilon [EC:3.6.3.14]
ATP synthase epsilon chain n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=ATPE_NOVAD
ATP synthase epsilon chain {ECO:0000255|HAMAP-Rule:MF_00530}; ATP synthase F1 sector epsilon subunit {ECO:0000255|HAMAP-Rule:MF_00530}; F-ATPase epsilon subunit {ECO:0000255|HAMAP-Rule:MF_00530}; TaxI
04302015_12_scaffold_485_5
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4344..5015
DNA (672bp) protein (224aa)
Two component transcriptional regulator n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8M5_9SPHN rbh
Two component transcriptional regulator {ECO:0000313|EMBL:EGD59000.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" sour
two component transcriptional regulator; K07657 two-component system, OmpR family, phosphate regulon response regulator PhoB
04302015_12_scaffold_485_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5053..6651)
DNA (1599bp) protein (533aa)
TonB-dependent receptor n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7Q7_NOVAD rbh
TonB-dependent receptor {ECO:0000313|EMBL:GAO53868.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
TonB-dependent receptor rbh
04302015_12_scaffold_485_7
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6648..7589)
DNA (942bp) protein (314aa)
TonB-dependent receptor n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7Q7_NOVAD
TonB-dependent receptor {ECO:0000313|EMBL:KHS46709.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobi
TonB-dependent receptor
04302015_12_scaffold_485_8
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7698..9302)
DNA (1605bp) protein (535aa)
Tetratricopeptide TPR_4 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7Q8_NOVAD rbh
Sulfotransferase {ECO:0000313|EMBL:KHS46708.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subt
hypothetical protein rbh
04302015_12_scaffold_485_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9371..10666
DNA (1296bp) protein (432aa)
Amino acid/polyamine/organocation transporter, APC superfamily n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7Q9_NOVAD rbh
Amino acid permease {ECO:0000313|EMBL:GAO53870.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium
phospholipid binding protein rbh
04302015_12_scaffold_485_10
unknown

Not on your lists

10722..11012
DNA (291bp) protein (97aa)

This feature has no annotations

04302015_12_scaffold_485_11
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11077..12681)
DNA (1605bp) protein (535aa)
FAD dependent oxidoreductase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7R0_NOVAD rbh
FAD dependent oxidoreductase {ECO:0000313|EMBL:KHS46706.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphi
FAD dependent oxidoreductase rbh
04302015_12_scaffold_485_12
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12814..13992)
DNA (1179bp) protein (393aa)
Rieske (2Fe-2S) protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7R1_NOVAD rbh
Rieske (2Fe-2S) protein rbh
Rieske (2Fe-2S) protein {ECO:0000313|EMBL:ABD26112.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
04302015_12_scaffold_485_13
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14062..14667
DNA (606bp) protein (202aa)
Transcriptional regulator, TetR family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7R2_NOVAD rbh
TetR family transcriptional regulator rbh
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABD26111.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" sourc
04302015_12_scaffold_485_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14648..16057)
DNA (1410bp) protein (470aa)
Peptidase M20 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7R3_NOVAD rbh
Peptidase M20:Peptidase M20 {ECO:0000313|EMBL:GAO53874.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosph
hypothetical protein rbh
04302015_12_scaffold_485_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16468..17304)
DNA (837bp) protein (279aa)
aldo/keto reductase n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI00037783D8 rbh
Oxidoreductase of aldo/keto reductase family {ECO:0000313|EMBL:GAO53416.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;
aldo/keto reductase
04302015_12_scaffold_485_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17753..18673)
DNA (921bp) protein (307aa)
Two component LuxR family transcriptional regulator n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8K7_9SPHN rbh
Two-component response regulator {ECO:0000313|EMBL:GAO53878.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="No
two component LuxR family transcriptional regulator
04302015_12_scaffold_485_17
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18673..20229)
DNA (1557bp) protein (519aa)
histidine kinase (EC:2.7.3.-)
Histidine kinase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8K6_9SPHN rbh
Histidine kinase {ECO:0000313|EMBL:EGD59019.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nit
04302015_12_scaffold_485_18
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20471..20674)
DNA (204bp) protein (68aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8K4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD59021.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
hypothetical protein
04302015_12_scaffold_485_19
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20918..22924
DNA (2007bp) protein (669aa)
TonB-dependent receptor n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7S1_NOVAD rbh
TonB-dependent receptor {ECO:0000313|EMBL:GAO53881.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
TonB-dependent receptor rbh
04302015_12_scaffold_485_20
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22984..23382
DNA (399bp) protein (133aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6ECZ9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EHJ60838.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
cytochrome B561; K12262 cytochrome b561
04302015_12_scaffold_485_21
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23695..26118
DNA (2424bp) protein (808aa)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sph
glycogen/starch/alpha-glucan phosphorylase (EC:2.4.1.1); K00688 starch phosphorylase [EC:2.4.1.1]
glycogen phosphorylase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B59907 rbh
04302015_12_scaffold_485_22
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26128..27792
DNA (1665bp) protein (555aa)
glycogen branching enzyme (EC:2.4.1.18); K00700 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
1,4-alpha-glucan branching enzyme GlgB {ECO:0000255|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000255|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000255|HAMA
glycogen branching protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI00031AFC19
Displaying 22 items

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