ggKbase home page

04302015_12_scaffold_133

Search features with annotation key words

Displaying items 1-30 of 93 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_12_scaffold_133_1
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..896
DNA (894bp) protein (298aa)
6-phosphogluconate dehydrogenase n=1 Tax=Methyloferula stellata RepID=UPI000370ADC4
6-phosphogluconate dehydrogenase-like protein
6-phosphogluconate dehydrogenase-like protein {ECO:0000313|EMBL:AGK56923.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" sour
04302015_12_scaffold_133_2
unknown

Not on your lists

899..1015
DNA (117bp) protein (39aa)

This feature has no annotations

04302015_12_scaffold_133_3
Brevundimonas subvibrioides, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1180..1923)
DNA (744bp) protein (248aa)
Transcriptional regulator, Crp/Fnr family n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QIR6_BRESC
Crp/Fnr family transcriptional regulator
Transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:ADL01399.1}; TaxID=633149 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source
04302015_12_scaffold_133_4
unknown

Not on your lists

2012..2410
DNA (399bp) protein (133aa)

This feature has no annotations

04302015_12_scaffold_133_5
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2669..4261)
DNA (1593bp) protein (531aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO
guaA2; GMP synthase (EC:6.3.5.2); K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
GMP synthase [glutamine-hydrolyzing] n=2 Tax=Agrobacterium RepID=F0L501_AGRSH
04302015_12_scaffold_133_6
Hirschia baltica, Hirschia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5131..6186)
DNA (1056bp) protein (352aa)
Fmu (Sun) domain-containing protein; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
sun family protein n=1 Tax=Hirschia maritima RepID=UPI00036A1FB7 rbh
Fmu (Sun) domain protein {ECO:0000313|EMBL:ACT59499.1}; TaxID=582402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hirschia.;" source="Hirschia baltica (str
04302015_12_scaffold_133_7
unknown

Not on your lists

comp(6393..6737)
DNA (345bp) protein (115aa)

This feature has no annotations

04302015_12_scaffold_133_8
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6734..7066)
DNA (333bp) protein (111aa)
hypothetical protein n=1 Tax=Maricaulis sp. JL2009 RepID=UPI00039F5397
Uncharacterized protein {ECO:0000313|EMBL:GAM97284.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
conserved hypothetical protein carrying Thioredoxin-like fold
04302015_12_scaffold_133_9
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7172..7876)
DNA (705bp) protein (235aa)
Blr7681 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89CW4_BRADU
hypothetical protein
Blr7681 protein {ECO:0000313|EMBL:BAC52946.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoeffici
04302015_12_scaffold_133_10
Hyphomonas sp. BRH_c22, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7886..9379)
DNA (1494bp) protein (498aa)
guaB; inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205); K00088 IMP dehydrogenase [EC:1.1.1.205]
inosine-5`-monophosphate dehydrogenase n=1 Tax=Ponticaulis koreensis RepID=UPI0003B76126 rbh
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:
04302015_12_scaffold_133_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9498..10163
DNA (666bp) protein (222aa)
Beta-phosphoglucomutase n=1 Tax=Rhodanobacter denitrificans RepID=I4WZJ2_9GAMM
beta-phosphoglucomutase
Beta-phosphoglucomutase {ECO:0000313|EMBL:AGG87862.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter de
04302015_12_scaffold_133_12
Hyphomonas sp. T16B2, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10160..10879)
DNA (720bp) protein (240aa)
Ribosomal RNA large subunit methyltransferase E {ECO:0000256|HAMAP-Rule:MF_01547}; EC=2.1.1.166 {ECO:0000256|HAMAP-Rule:MF_01547};; 23S rRNA Um2552 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547};
ribosomal RNA methyltransferase RrmJ/FtsJ; K02427 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166]
23S rRNA methyltransferase n=1 Tax=Hirschia maritima RepID=UPI000375B1EF
04302015_12_scaffold_133_13
Hirschia baltica, Hirschia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10876..12138)
DNA (1263bp) protein (421aa)
Ppx/GppA phosphatase; K01524 exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
exopolyphosphatase n=1 Tax=Hirschia maritima RepID=UPI000381B9BB rbh
Ppx/GppA phosphatase {ECO:0000313|EMBL:ACT59504.1}; TaxID=582402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hirschia.;" source="Hirschia baltica (strain
04302015_12_scaffold_133_14
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12254..12589
DNA (336bp) protein (112aa)
Hemimethylated DNA binding protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VKM5_CAUST
hemimethylated DNA binding protein; K11940 heat shock protein HspQ
Hemimethylated DNA binding protein {ECO:0000313|EMBL:ADG11048.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Cauloba
04302015_12_scaffold_133_15
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12647..13498
DNA (852bp) protein (284aa)
phhA; phenylalanine 4-monooxygenase; K00500 phenylalanine-4-hydroxylase [EC:1.14.16.1]
hypothetical protein n=1 Tax=Henriciella marina RepID=UPI000377104F
Phenylalanine-4-hydroxylase {ECO:0000313|EMBL:ACG77823.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenyloba
04302015_12_scaffold_133_16
unknown

Not on your lists

comp(13495..14679)
DNA (1185bp) protein (395aa)

This feature has no annotations

04302015_12_scaffold_133_17
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14824..15666
DNA (843bp) protein (281aa)
deoxyribodipyrimidine photolyase family protein; K01669 deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
Deoxyribodipyrimidine photolyase family protein n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C191_HYPNA
Deoxyribodipyrimidine photo-lyase {ECO:0000313|EMBL:EXJ51362.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;
04302015_12_scaffold_133_18
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15654..16223
DNA (570bp) protein (190aa)
Deoxyribodipyrimidine photolyase {ECO:0000313|EMBL:ESR23522.1}; EC=4.1.99.3 {ECO:0000313|EMBL:ESR23522.1};; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiace
deoxyribodipyrimidine photo-lyase (EC:4.1.99.3); K01669 deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
Deoxyribodipyrimidine photolyase n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4QUV1_9RHIZ
04302015_12_scaffold_133_19
Hyphomonas sp. T16B2, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16220..17560
DNA (1341bp) protein (447aa)
NADH-ubiquinone oxidoreductase subunit 6 n=1 Tax=Ponticaulis koreensis RepID=UPI0003B5F43B rbh
Uncharacterized protein {ECO:0000313|EMBL:KCZ51705.1}; TaxID=1280941 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas sp. T16B
hypothetical protein
04302015_12_scaffold_133_20
Hyphomonas oceanitis, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17557..18396
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C193_HYPNA
Uncharacterized protein {ECO:0000313|EMBL:KDA01320.1}; TaxID=1280953 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas oceaniti
hypothetical protein; K09701 hypothetical protein
04302015_12_scaffold_133_21
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18415..19590
DNA (1176bp) protein (392aa)
Cyclopropane-fatty-acyl-phospholipid synthase {ECO:0000313|EMBL:GAM99313.1}; EC=2.1.1.79 {ECO:0000313|EMBL:GAM99313.1};; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source=
cyclopropane-fatty-acyl-phospholipid synthase (EC:2.1.1.79); K00574 cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
hypothetical protein n=1 Tax=Henriciella marina RepID=UPI0003640BEC rbh
04302015_12_scaffold_133_22
Hirschia baltica, Hirschia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19832..22780
DNA (2949bp) protein (983aa)
TonB-dependent receptor n=1 Tax=Hirschia baltica (strain ATCC 49814 / DSM 5838 / IFAM 1418) RepID=C6XQ67_HIRBI
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:ACT58584.1}; Flags: Precursor;; TaxID=582402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hirschia.;" source="Hir
04302015_12_scaffold_133_23
Hyphomonas polymorpha, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22821..23240
DNA (420bp) protein (140aa)
Outer membrane receptor for ferrienterochelin and colicins n=1 Tax=Rheinheimera sp. A13L RepID=F7NU18_9GAMM
TonB-dependent outer membrane receptor {ECO:0000313|EMBL:KDA00310.1}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyph
TonB-dependent receptor
04302015_12_scaffold_133_24
Nocardia cyriacigeorgica, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23244..23549)
DNA (306bp) protein (102aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCF65978.1}; TaxID=1127134 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia cyriacigeorgica (strain GUH-2).;"
04302015_12_scaffold_133_25
unknown

Not on your lists

comp(23555..23947)
DNA (393bp) protein (131aa)

This feature has no annotations

04302015_12_scaffold_133_26
Hirschia baltica, Hirschia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24044..24982)
DNA (939bp) protein (313aa)
GTPase Era n=1 Tax=Hirschia baltica (strain ATCC 49814 / DSM 5838 / IFAM 1418) RepID=C6XJG6_HIRBI rbh
era; GTP-binding protein Era; K03595 GTP-binding protein Era rbh
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=582402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hirschia.;" source="
04302015_12_scaffold_133_27
Hirschia baltica, Hirschia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24979..25743)
DNA (765bp) protein (255aa)
ribonuclease III (EC:3.1.26.3); K03685 ribonuclease III [EC:3.1.26.3]
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule
hypothetical protein n=1 Tax=Hirschia maritima RepID=UPI000362EADA
04302015_12_scaffold_133_28
Hyphomonas oceanitis, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25740..26162)
DNA (423bp) protein (141aa)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237208}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF
holo-acyl-carrier-protein synthase; K00997 holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
Holo-[acyl-carrier-protein] synthase n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VKS3_CAUST
04302015_12_scaffold_133_29
Hirschia baltica, Hirschia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26159..26911)
DNA (753bp) protein (251aa)
pyridoxine 5'-phosphate synthase (EC:2.6.99.2); K03474 pyridoxine 5-phosphate synthase [EC:2.6.99.2] rbh
Pyridoxine 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088558}; Short=PNP synthase {ECO:0000256|HAMAP-Rule:MF_00279};; EC=2.6.99.2 {ECO:0000256|HAMAP-Rule:MF_00279,
Pyridoxine 5'-phosphate synthase n=1 Tax=Hirschia baltica (strain ATCC 49814 / DSM 5838 / IFAM 1418) RepID=C6XJG3_HIRBI rbh
04302015_12_scaffold_133_30
Hirschia baltica, Hirschia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26908..27492)
DNA (585bp) protein (195aa)
orotate phosphoribosyltransferase; K00762 orotate phosphoribosyltransferase [EC:2.4.2.10]
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00078102}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=
Orotate phosphoribosyltransferase n=1 Tax=Hirschia baltica (strain ATCC 49814 / DSM 5838 / IFAM 1418) RepID=C6XJG2_HIRBI
Displaying items 1-30 of 93 in total

View Taxonomy