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04302015_12_scaffold_5243

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_12_scaffold_5243_1
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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2..307
DNA (306bp) protein (102aa)
30S ribosomal protein S8 n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744E65
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
30S ribosomal protein S8; K02994 small subunit ribosomal protein S8
04302015_12_scaffold_5243_2
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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329..868
DNA (540bp) protein (180aa)
50S ribosomal protein L6 n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744E64
rplF; 50S ribosomal protein L6; K02933 large subunit ribosomal protein L6
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter fla
04302015_12_scaffold_5243_3
Akkermansia sp. CAG:344, Akkermansia, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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887..1243
DNA (357bp) protein (119aa)
50S ribosomal protein L18 n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744E63
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1262691 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Akkermansiaceae; Akkermansia; environmental samples
50S ribosomal protein L18; K02881 large subunit ribosomal protein L18
04302015_12_scaffold_5243_4
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

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1265..1867
DNA (603bp) protein (201aa)
30S ribosomal protein S5 n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744E62
30S ribosomal protein S5; K02988 small subunit ribosomal protein S5
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
04302015_12_scaffold_5243_5
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

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1897..2013
DNA (117bp) protein (39aa)
50S ribosomal protein L15 n=1 Tax=Methylacidiphilum fumariolicum SolV RepID=I0K0C5_9BACT
Suspect SCG annotation. See neighboring gene [04302015_12_scaffold_5243_6].
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methyla
rplO; ribosomal protein L15; K02876 large subunit ribosomal protein L15
04302015_12_scaffold_5243_6
Calditerrivibrio nitroreducens, Calditerrivibrio, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

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2024..2305
DNA (282bp) protein (94aa)
50S ribosomal protein L15 n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744E61
50S ribosomal protein L15; K02876 large subunit ribosomal protein L15
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=768670 species="Bacteria; Deferribacteres; Deferribacterales; Deferribacteraceae.;" source="Calditerri
04302015_12_scaffold_5243_7
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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2400..3902
DNA (1503bp) protein (501aa)
preprotein translocase subunit SecY n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744E60 rbh
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY rbh
04302015_12_scaffold_5243_8
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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3920..4747
DNA (828bp) protein (276aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974
map; methionine aminopeptidase; K01265 methionyl aminopeptidase [EC:3.4.11.18]
methionine aminopeptidase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744E5F
04302015_12_scaffold_5243_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5079..5447
DNA (369bp) protein (123aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VML4_RHOPX
RND family efflux transporter MFP subunit; K07799 putative multidrug efflux transporter MdtA
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ADU43504.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" sour
04302015_12_scaffold_5243_10
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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5408..6115
DNA (708bp) protein (236aa)
RND family efflux transporter, MFP subunit n=1 Tax=Herbaspirillum sp. CF444 RepID=J3DB21_9BURK
RND family efflux transporter MFP subunit; K07799 putative multidrug efflux transporter MdtA
Tax=GWA2_Rhodocyclales_65_20_curated
04302015_12_scaffold_5243_11
Collimonas fungivorans, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6144..7541
DNA (1398bp) protein (466aa)
Uncharacterized protein n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0AJ82_COLFT
hypothetical protein; K07788 RND superfamily, multidrug transport protein MdtB
Uncharacterized protein {ECO:0000313|EMBL:AEK61016.1}; TaxID=1005048 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas fungivor
Displaying 11 items

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