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04302015_12_scaffold_530

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Displaying 13 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_12_scaffold_530_1
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..310
DNA (309bp) protein (103aa)
transcriptional regulator n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003746E1F
Bradyrhizobium elkanii strain UASWS1015 Contig177, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48314.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrh
transcriptional regulator; K02529 LacI family transcriptional regulator
04302015_12_scaffold_530_2
unknown

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467..607
DNA (141bp) protein (47aa)

This feature has no annotations

04302015_12_scaffold_530_3
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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804..1100
DNA (297bp) protein (99aa)
Transposase IS3/IS911 family protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IBT6_XANP2
transposase IS3/IS911 family protein
Transposase IS3/IS911 family protein {ECO:0000313|EMBL:ABS65479.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthoba
04302015_12_scaffold_530_4
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1094..2023
DNA (930bp) protein (310aa)
Integrase catalytic region n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IBT7_XANP2 rbh
integrase catalytic subunit rbh
Integrase catalytic region {ECO:0000313|EMBL:ABS65480.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autot
04302015_12_scaffold_530_5
Rhodovulum sp. NI22, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2377..2835)
DNA (459bp) protein (153aa)
DNA mismatch endonuclease Vsr (EC:3.1.-.-); K07458 DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
DNA glycosylase n=1 Tax=Amorphus coralli RepID=UPI00036F549B
DNA mismatch repair protein Vsr {ECO:0000313|EMBL:KGB82760.1}; TaxID=1469613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum
04302015_12_scaffold_530_6
Rhodovulum sp. NI22, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2978..4777)
DNA (1800bp) protein (600aa)
Uncharacterized protein n=1 Tax=Ketogulonicigenium vulgare (strain WSH-001) RepID=F9Y925_KETVW rbh
AIPR protein {ECO:0000313|EMBL:KGB82758.1}; TaxID=1469613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. NI22.;"
hypothetical protein rbh
04302015_12_scaffold_530_7
Rhodovulum sp. NI22, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4779..5783)
DNA (1005bp) protein (335aa)
Uncharacterized protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B3T7_PARDP rbh
Uncharacterized protein {ECO:0000313|EMBL:KGB82757.1}; TaxID=1469613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. NI2
hypothetical protein rbh
04302015_12_scaffold_530_8
Rhodovulum sp. NI22, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5767..8637)
DNA (2871bp) protein (957aa)
Endonuclease n=2 Tax=Ketogulonicigenium vulgare RepID=E3F299_KETVY rbh
Endonuclease {ECO:0000313|EMBL:KGB82756.1}; TaxID=1469613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. NI22.;"
endonuclease rbh
04302015_12_scaffold_530_9
Rhodovulum sp. NI22, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8637..10136)
DNA (1500bp) protein (500aa)
Uncharacterized protein n=2 Tax=Ketogulonicigenium vulgare RepID=F9Y922_KETVW rbh
ATPase {ECO:0000313|EMBL:KGB82755.1}; TaxID=1469613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. NI22.;"
hypothetical protein rbh
04302015_12_scaffold_530_10
Ketogulonicigenium vulgare, Ketogulonicigenium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10141..12348)
DNA (2208bp) protein (736aa)
RNA polymerase sigma factor n=1 Tax=Ketogulonicigenium vulgare (strain WSH-001) RepID=F9Y921_KETVW rbh
rpoD; RNA polymerase sigma factor; K03086 RNA polymerase primary sigma factor rbh
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=759362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ketogulonicigenium.;" source="Ketog
04302015_12_scaffold_530_11
Comamonadaceae bacterium B1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12659..14164)
DNA (1506bp) protein (502aa)
DNA-cytosine methyltransferase; K00558 DNA (cytosine-5-)-methyltransferase [EC:2.1.1.37]
DNA-cytosine methyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WXT9_9GAMM rbh
Site-specific DNA methylase {ECO:0000313|EMBL:BAO82897.1}; TaxID=1458426 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium B1.;
04302015_12_scaffold_530_12
Comamonadaceae bacterium B1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14234..14425)
DNA (192bp) protein (64aa)
hypothetical protein n=1 Tax=Cupriavidus sp. UYPR2.512 RepID=UPI00036C355A
hypothetical protein
Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain {ECO:0000313|EMBL:BAO82898.1}; TaxID=1458426 species="Bacteria; Proteobacteria; Betaprot
04302015_12_scaffold_530_13
Candidatus Jettenia caeni, Candidatus Jettenia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

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comp(14558..15379)
DNA (822bp) protein (274aa)
carbamoyltransferase (EC:2.1.3.-); K00612 carbamoyltransferase [EC:2.1.3.-]
Carbamoyl transferase n=1 Tax=planctomycete KSU-1 RepID=I3IIS6_9PLAN
Carbamoyl transferase {ECO:0000313|EMBL:GAB61621.1}; TaxID=247490 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae.;" source="planctomycete KSU-1.;"
Displaying 13 items

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