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04302015_12_scaffold_0

Search features with annotation key words

Displaying items 1-30 of 265 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_12_scaffold_0_1
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(232..525)
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B8D3_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK59293.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium den
04302015_12_scaffold_0_2
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(749..1612)
DNA (864bp) protein (288aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003784686
Uncharacterized protein {ECO:0000313|EMBL:AHB47179.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium ni
hypothetical protein
04302015_12_scaffold_0_3
unknown

Not on your lists

1927..2403
DNA (477bp) protein (159aa)

This feature has no annotations

04302015_12_scaffold_0_4
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2440..3069)
DNA (630bp) protein (210aa)
Invasion protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SD24_9RHIZ
Invasion protein {ECO:0000313|EMBL:AHB47960.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativo
invasion associated locus B family protein
04302015_12_scaffold_0_5
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3535..4455
DNA (921bp) protein (307aa)
Cytochrome c oxidase subunit 2; EC=1.9.3.1;; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativoran
cytochrome-c oxidase (EC:1.9.3.1); K02275 cytochrome c oxidase subunit II [EC:1.9.3.1]
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036639A5 rbh
04302015_12_scaffold_0_6
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4540..6159
DNA (1620bp) protein (540aa)
cytochrome C oxidase subunit I; K02274 cytochrome c oxidase subunit I [EC:1.9.3.1] rbh
cytochrome C oxidase subunit I n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000368CBDE rbh
Cytochrome C oxidase subunit I {ECO:0000313|EMBL:AHB47962.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicro
04302015_12_scaffold_0_7
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6301..7266
DNA (966bp) protein (322aa)
coxE; heme O synthase (EC:2.5.1.-); K02301 protoheme IX farnesyltransferase [EC:2.5.1.-] rbh
Protoheme IX farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_00154, ECO:0000313|EMBL:CCB67393.1};; Heme B farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00
Protoheme IX farnesyltransferase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J978_HYPSM rbh
04302015_12_scaffold_0_8
unknown

Not on your lists

7287..7454
DNA (168bp) protein (56aa)
Uncharacterized protein {ECO:0000313|EMBL:CPR22412.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp.
04302015_12_scaffold_0_9
unknown

Not on your lists

7469..8098
DNA (630bp) protein (210aa)
Cytochrome C oxidase assembly protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SD30_9RHIZ
Cytochrome c oxidase assembly protein CtaG {ECO:0000256|HAMAP-Rule:MF_00155, ECO:0000313|EMBL:CPR22413.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicro
cytochrome C oxidase assembly protein; K02258 cytochrome c oxidase assembly protein subunit 11
04302015_12_scaffold_0_10
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8154..9134
DNA (981bp) protein (327aa)
cytochrome C oxidase subunit III; K02276 cytochrome c oxidase subunit III [EC:1.9.3.1] rbh
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037DA6FE rbh
Cytochrome B562 {ECO:0000313|EMBL:AHB47966.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativor
04302015_12_scaffold_0_11
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9215..9580
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SBV5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AHB47967.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium ni
hypothetical protein
04302015_12_scaffold_0_12
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9611..10372
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000368C1C4
Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion {ECO:0000313|EMBL:BAQ16453.1}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceani
surfeit locus 1 family protein; K14998 surfeit locus 1 family protein
04302015_12_scaffold_0_13
unknown

Not on your lists

10457..11869
DNA (1413bp) protein (471aa)
Threonine synthase {ECO:0000313|EMBL:CPR22417.1}; EC=4.2.3.1 {ECO:0000313|EMBL:CPR22417.1};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filom
thrC; threonine synthase (EC:4.2.3.1); K01733 threonine synthase [EC:4.2.3.1]
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000364CFB4 rbh
04302015_12_scaffold_0_14
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11866..13137
DNA (1272bp) protein (424aa)
Multidrug transporter n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SDE0_9RHIZ rbh
Multidrug transporter {ECO:0000313|EMBL:AHB47969.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitr
protease rbh
04302015_12_scaffold_0_15
unknown

Not on your lists

13159..13755
DNA (597bp) protein (199aa)
N-acetyltransferase GCN5; K03790 ribosomal-protein-alanine N-acetyltransferase [EC:2.3.1.128]
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003670605
GCN5 family N-acetyltransferase {ECO:0000313|EMBL:CPR22419.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrob
04302015_12_scaffold_0_16
unknown

Not on your lists

13752..17414
DNA (3663bp) protein (1221aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00035F19DC rbh
Diguanylate cyclase/phosphodiesterase with PAS/PAC and periplasmic/7TM domain sensor(S) {ECO:0000313|EMBL:CPR22420.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales
diguanylate cyclase/phosphodiesterase rbh
04302015_12_scaffold_0_17
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17549..18169)
DNA (621bp) protein (207aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000370CFC9
UPF0301 protein W911_05510 {ECO:0000256|HAMAP-Rule:MF_00758}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicro
hypothetical protein; K07735 putative transcriptional regulator
04302015_12_scaffold_0_18
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18209..19048
DNA (840bp) protein (280aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036FF817
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK59276.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium den
04302015_12_scaffold_0_19
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19145..19648
DNA (504bp) protein (168aa)
Redoxin domain protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JUR0_HYPDA
redoxin
Redoxin domain protein {ECO:0000313|EMBL:ADJ24690.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium deni
04302015_12_scaffold_0_20
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20214..21233
DNA (1020bp) protein (340aa)
hypothetical protein n=1 Tax=Methylocystis rosea RepID=UPI00035E0CD5 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACB95262.1}; Flags: Precursor;; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Be
04302015_12_scaffold_0_21
Desulfovibrio magneticus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21300..22091
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) RepID=C4XTV2_DESMR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH73617.1}; TaxID=573370 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovib
04302015_12_scaffold_0_22
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22260..22712)
DNA (453bp) protein (151aa)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00
rnhA; ribonuclease H; K03469 ribonuclease HI [EC:3.1.26.4]
RNaseH ribonuclease n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037F9906
04302015_12_scaffold_0_23
unknown

Not on your lists

comp(22709..23680)
DNA (972bp) protein (324aa)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00301, ECO:0000256|SAAS:SAAS00085804}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00301};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00301};; EC=2.7.1.39 {ECO:0000256|
homoserine kinase (EC:2.7.1.39) rbh
Homoserine kinase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B8B3_9RHIZ rbh
04302015_12_scaffold_0_24
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23691..24722)
DNA (1032bp) protein (344aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxI
ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003700034 rbh
04302015_12_scaffold_0_25
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24900..25553
DNA (654bp) protein (218aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000363DE55
Uncharacterized protein {ECO:0000313|EMBL:AHB47978.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium ni
hypothetical protein
04302015_12_scaffold_0_26
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25641..26159)
DNA (519bp) protein (173aa)
H+transporting two-sector ATPase B/B' subunit; K02109 F-type H+-transporting ATPase subunit b [EC:3.6.3.14]
ATP synthase subunit b n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JUQ5_HYPDA
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subuni
04302015_12_scaffold_0_27
unknown

Not on your lists

comp(26165..26707)
DNA (543bp) protein (181aa)
ATP synthase subunit b n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B6N8_9RHIZ
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398, ECO:0000313|EMBL:CPR22430.1}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF
H+transporting two-sector ATPase B/B' subunit
04302015_12_scaffold_0_28
unknown

Not on your lists

comp(26877..27101)
DNA (225bp) protein (75aa)
F0F1 ATP synthase subunit C; K02110 F-type H+-transporting ATPase subunit c [EC:3.6.3.14]
H+transporting two-sector ATPase C subunit n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQY6_PARL1
ATP synthase subunit c {ECO:0000313|EMBL:CPR22431.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y
04302015_12_scaffold_0_29
unknown

Not on your lists

comp(27156..27902)
DNA (747bp) protein (249aa)
ATP synthase F0 subunit alpha; K02108 F-type H+-transporting ATPase subunit a [EC:3.6.3.14]
ATP synthase subunit a n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YGI0_MOBAS
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:
04302015_12_scaffold_0_30
unknown

Not on your lists

comp(27966..28385)
DNA (420bp) protein (140aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036EAD38
ATP synthase protein I {ECO:0000313|EMBL:CPR22433.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y
FoF1 ATP synthase subunit I; K02116 ATP synthase protein I
Displaying items 1-30 of 265 in total

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