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04302015_12_scaffold_18

Search features with annotation key words

Displaying items 1-30 of 184 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_12_scaffold_18_1
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

111..1601
DNA (1491bp) protein (497aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JIS7_HYPSM rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCB64189.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp.
04302015_12_scaffold_18_2
unknown

Not on your lists

comp(1665..2075)
DNA (411bp) protein (137aa)

This feature has no annotations

04302015_12_scaffold_18_3
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2178..3128
DNA (951bp) protein (317aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SGL0_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHB49673.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium ni
04302015_12_scaffold_18_4
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3368..3895
DNA (528bp) protein (176aa)
Single-stranded DNA-binding protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B880_9RHIZ
single-stranded DNA-binding protein
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=670307 species="Bacteria; Proteobacteria; Alph
04302015_12_scaffold_18_5
unknown

Not on your lists

4026..4313
DNA (288bp) protein (96aa)

This feature has no annotations

04302015_12_scaffold_18_6
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4288..4950)
DNA (663bp) protein (221aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000372E4D7
Photosystem reaction center subunit H {ECO:0000313|EMBL:AHB48641.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyp
PRC-barrel domain-containing protein
04302015_12_scaffold_18_7
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5263..8064
DNA (2802bp) protein (934aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897, ECO:0000313|EMBL:CCB64583.1};; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria
gyrA; DNA gyrase subunit A (EC:5.99.1.3); K02469 DNA gyrase subunit A [EC:5.99.1.3] rbh
DNA gyrase subunit A n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000368439E rbh
04302015_12_scaffold_18_8
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8103..8876)
DNA (774bp) protein (258aa)
Crp/Fnr family transcription regulator n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SDN8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:BAQ17329.1}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;
Crp/Fnr family transcriptional regulator
04302015_12_scaffold_18_9
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9159..9908
DNA (750bp) protein (250aa)
OmpW family protein n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SFA7_9RHIZ
OmpW family protein {ECO:0000313|EMBL:AHB48644.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrat
hypothetical protein
04302015_12_scaffold_18_10
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10068..10574
DNA (507bp) protein (169aa)
coaD; pantetheine-phosphate adenylyltransferase (EC:2.7.7.3); K00954 pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyr
Phosphopantetheine adenylyltransferase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J565_HYPSM
04302015_12_scaffold_18_11
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10708..11286
DNA (579bp) protein (193aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyp
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036F7090
cyclophilin type peptidyl-prolyl cis-trans isomerase
04302015_12_scaffold_18_12
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11345..11821
DNA (477bp) protein (159aa)
ppiB; peptidyl-prolyl cis-trans isomerase B (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase B (Rotamase B)(PPIase B) {ECO:0000313|EMBL:CCB64588.1}; EC=5.2.1.8 {ECO:0000313|EMBL:CCB64588.1};; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacter
Peptidyl-prolyl cis-trans isomerase B (Rotamase B)(PPIase B) n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J5W2_HYPSM
04302015_12_scaffold_18_13
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11825..12217
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EQJ2_METSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK52205.1}; Flags: Precursor;; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Me
04302015_12_scaffold_18_14
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12387..13391
DNA (1005bp) protein (335aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000363F21D rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADJ25089.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium den
04302015_12_scaffold_18_15
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13471..14556
DNA (1086bp) protein (362aa)
queA; S-adenosylmethionine--tRNA ribosyltransferase-isomerase; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-]
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};;
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003668FE3 rbh
04302015_12_scaffold_18_16
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14629..15777
DNA (1149bp) protein (383aa)
tgt; tRNA-guanine transglycosylase (EC:2.4.2.29); K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29] rbh
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzym
Queuine tRNA-ribosyltransferase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J5W6_HYPSM rbh
04302015_12_scaffold_18_17
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15784..16518)
DNA (735bp) protein (245aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000360925F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCE01256.1}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp.
04302015_12_scaffold_18_18
unknown

Not on your lists

comp(16601..16735)
DNA (135bp) protein (45aa)

This feature has no annotations

04302015_12_scaffold_18_19
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16923..17906)
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037FE136 rbh
Uncharacterized protein {ECO:0000313|EMBL:AHB48651.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium ni
hypothetical protein; K15270 S-adenosylmethionine uptake transporter
04302015_12_scaffold_18_trna_1
unknown

Not on your lists

18097..18168
DNA (72bp)
transferRNA
04302015_12_scaffold_18_20
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18314..19174
DNA (861bp) protein (287aa)
3-mercaptopyruvate sulfurtransferase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SFB7_9RHIZ rbh
Sulfurtransferase {ECO:0000256|RuleBase:RU000507}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrat
rhodanese rbh
04302015_12_scaffold_18_21
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19206..19826
DNA (621bp) protein (207aa)
uroporphyrin-III C-methyltransferase; K02302 uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
Uroporphyrin-III C-methyltransferase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JCD0_HYPSM
Uroporphyrin-III C-methyltransferase {ECO:0000313|EMBL:CCB63915.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hypho
04302015_12_scaffold_18_22
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19832..21409)
DNA (1578bp) protein (526aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036BD0C8 rbh
Glucan biosynthesis protein D {ECO:0000313|EMBL:AHB48657.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrob
periplasmic glucan biosynthesis protein MdoG; K03670 periplasmic glucans biosynthesis protein rbh
04302015_12_scaffold_18_23
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21629..22804
DNA (1176bp) protein (392aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000365D492 rbh
RND family efflux transporter MFP subunit
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
04302015_12_scaffold_18_24
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22865..26047
DNA (3183bp) protein (1061aa)
transporter n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036E7E96 rbh
RND efflux transporter, HAE1 family, translocase subunit {ECO:0000313|EMBL:CCB63877.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrob
HAE1 family RND efflux transporter translocase subunit
04302015_12_scaffold_18_25
unknown

Not on your lists

26177..27106
DNA (930bp) protein (310aa)
Uncharacterized protein n=2 Tax=Labrenzia RepID=U7FNS6_9RHOB
Putative heat resistant agglutinin 1 protein {ECO:0000313|EMBL:CPR20886.1}; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" sourc
porin
04302015_12_scaffold_18_trna_2
unknown

Not on your lists

27463..27544
DNA (82bp)
transferRNA
04302015_12_scaffold_18_26
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27662..29017
DNA (1356bp) protein (452aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-R
tig; trigger factor (EC:5.2.1.8) rbh
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037FCD44 rbh
04302015_12_scaffold_18_27
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29269..29916
DNA (648bp) protein (216aa)
endopeptidase Clp (EC:3.4.21.92); K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] rbh
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopep
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JPM5_HYPDA rbh
04302015_12_scaffold_18_28
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30310..31560
DNA (1251bp) protein (417aa)
ATP-dependent protease n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003715961 rbh
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
ATP-dependent Clp protease ATP-binding subunit ClpX rbh
Displaying items 1-30 of 184 in total

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