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04302015_12_scaffold_137

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_12_scaffold_137_1
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(49..1569)
DNA (1521bp) protein (507aa)
Superfamily I DNA and RNA helicase and helicase subunits-like protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y0E8_LEPCP rbh
superfamily I DNA/RNA helicase rbh
Superfamily I DNA and RNA helicase and helicase subunits-like protein {ECO:0000313|EMBL:ACB36627.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;"
04302015_12_scaffold_137_2
Anabaena sp. 90, Anabaena, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(1566..4547)
DNA (2982bp) protein (994aa)
UvrD-like DNA helicase (EC:3.-.-.-) rbh
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=46234 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Anabaena.;" source="Anabaena sp. 90.;
UvrD-like DNA helicase n=1 Tax=Anabaena sp. 90 RepID=K7W8G6_9NOST rbh
04302015_12_scaffold_137_3
GWA2_Gallionellales_54_124_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4707..8153)
DNA (3447bp) protein (1149aa)
Type II restriction enzyme n=1 Tax=Thauera sp. 28 RepID=N6ZB31_9RHOO rbh
type II restriction enzyme rbh
Tax=GWA2_Gallionellales_54_124_curated
04302015_12_scaffold_137_4
CG_Gallio_01, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8163..11765)
DNA (3603bp) protein (1201aa)
ATPase-like protein n=1 Tax=Gallionella capsiferriformans (strain ES-2) RepID=D9SEE0_GALCS rbh
ATPase-like protein rbh
Tax=CG_Gallio_01
04302015_12_scaffold_137_5
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11792..12379)
DNA (588bp) protein (196aa)
Cytoplasmic protein n=1 Tax=Thauera phenylacetica B4P RepID=N6YW04_9RHOO
Cytoplasmic protein {ECO:0000313|EMBL:ENO98406.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
hypothetical protein
04302015_12_scaffold_137_6
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12376..12969)
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Thauera phenylacetica B4P RepID=N6ZVC6_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:ENO98407.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.
hypothetical protein
04302015_12_scaffold_137_7
Comamonadaceae bacterium B1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12956..13861)
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa ATCC 25324 RepID=K1C5W9_PSEAI rbh
Predicted transcriptional regulator {ECO:0000313|EMBL:BAO84223.1}; TaxID=1458426 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacter
hypothetical protein
04302015_12_scaffold_137_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14152..16629)
DNA (2478bp) protein (826aa)
gyrB; DNA gyrase subunit B (EC:5.99.1.3); K02470 DNA gyrase subunit B [EC:5.99.1.3]
DNA gyrase subunit B n=1 Tax=Thiobacillus thioparus RepID=UPI0003613858
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_137_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16706..17809)
DNA (1104bp) protein (368aa)
DNA polymerase III subunit beta (EC:2.7.7.7); K02338 DNA polymerase III subunit beta [EC:2.7.7.7]
DNA polymerase III subunit beta id=1307778 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_137_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17989..19365)
DNA (1377bp) protein (459aa)
Chromosomal replication initiator protein DnaA id=1307777 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
chromosomal replication initiator protein DnaA; K02313 chromosomal replication initiator protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_137_11
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


19558..19692
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=RL34_THIDA
50S ribosomal protein L34P; K02914 large subunit ribosomal protein L34
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
04302015_12_scaffold_137_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19813..20112
DNA (300bp) protein (100aa)
ribonuclease P protein component (EC:3.1.26.5); K03536 ribonuclease P protein component [EC:3.1.26.5]
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036DF2C8
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_137_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20130..21764
DNA (1635bp) protein (545aa)
Membrane protein insertase YidC id=1307774 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
protein translocase subunit YidC; K03217 preprotein translocase subunit YidC
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_137_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21885..23219
DNA (1335bp) protein (445aa)
tRNA modification GTPase TrmE; K03650 tRNA modification GTPase [EC:3.6.-.-]
tRNA modification GTPase MnmE id=1307773 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_137_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23257..25041
DNA (1785bp) protein (595aa)
ABC transporter ATPase id=1307772 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
ABC transporter ATPase; K06148 ATP-binding cassette, subfamily C, bacterial rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_137_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25432..27264
DNA (1833bp) protein (611aa)
RNA helicase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003630CE4
DEAD/DEAH box helicase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_137_17
unknown

Not on your lists

27261..28025
DNA (765bp) protein (255aa)

This feature has no annotations

04302015_12_scaffold_137_18
GWF2_Lentisphaerae_57_35_curated, Lentisphaerae, Bacteria

Not on your lists

comp(29126..30514)
DNA (1389bp) protein (463aa)
polysaccharide-degrading enzyme rbh
Putative polysaccharide-degrading enzyme id=4097239 bin=GWF2_Lentisphaerae_57_35 species=Planctomyces maris genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459 rbh
Tax=GWF2_Lentisphaerae_57_35_curated
04302015_12_scaffold_137_19
unknown

Not on your lists

comp(30870..31202)
DNA (333bp) protein (111aa)

This feature has no annotations

04302015_12_scaffold_137_20
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

31516..32502
DNA (987bp) protein (329aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017465B8 rbh
Permease {ECO:0000313|EMBL:EDY18816.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
ycgR; hypothetical protein
04302015_12_scaffold_137_21
unknown

Not on your lists

32509..32775
DNA (267bp) protein (89aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017465B9
Displaying 21 items

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