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04302015_12_scaffold_280

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Displaying items 1-30 of 105 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_12_scaffold_280_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(143..1255)
DNA (1113bp) protein (371aa)
aspartate-semialdehyde dehydrogenase (EC:1.2.1.11); K00133 aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] id=12497943 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
aspartate-semialdehyde dehydrogenase (EC:1.2.1.11); K00133 aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_280_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1296..2357)
DNA (1062bp) protein (354aa)
3-isopropylmalate dehydrogenase (EC:1.1.1.85); K00052 3-isopropylmalate dehydrogenase [EC:1.1.1.85] rbh
3-isopropylmalate dehydrogenase id=1333552 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_280_3
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2397..3035)
DNA (639bp) protein (213aa)
leuD; isopropylmalate isomerase small subunit (EC:4.2.1.33); K01704 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] id=12493945 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
leuD; isopropylmalate isomerase small subunit (EC:4.2.1.33); K01704 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_280_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3041..3175)
DNA (135bp) protein (45aa)
entericidin ecnab id=12497946 bin=THIO_MID species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_280_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3186..4589)
DNA (1404bp) protein (468aa)
isopropylmalate isomerase large subunit (EC:4.2.1.33); K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] rbh
3-isopropylmalate dehydratase large subunit id=1333549 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_280_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4682..5821)
DNA (1140bp) protein (380aa)
MFS transporter n=1 Tax=Thiobacillus denitrificans RepID=UPI00037EA599 rbh
putative transporter; K05820 MFS transporter, PPP family, 3-phenylpropionic acid transporter
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_280_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6181..6819
DNA (639bp) protein (213aa)
diguanylate cyclase id=12497949 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
diguanylate cyclase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_280_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6816..7652
DNA (837bp) protein (279aa)
cobyrinic acid a,c-diamide synthase n=1 Tax=Thiobacillus thioparus RepID=UPI00036CB8DD rbh
cobyrinic acid a,c-diamide synthase; K04562 flagellar biosynthesis protein FlhG
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_280_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7691..8470)
DNA (780bp) protein (260aa)
hypothetical protein id=12493940 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_280_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8583..9227
DNA (645bp) protein (215aa)
Putative uncharacterized protein id=1349958 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_280_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9230..9415
DNA (186bp) protein (62aa)
putative isomerase; K01821 4-oxalocrotonate tautomerase [EC:5.3.2.-]
Putative isomerase id=1349959 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_280_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9453..11249
DNA (1797bp) protein (599aa)
excinuclease ABC subunit C n=1 Tax=Thiobacillus thioparus RepID=UPI00036779C0 rbh
excinuclease ABC subunit C; K03703 excinuclease ABC subunit C rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_280_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11249..11815
DNA (567bp) protein (189aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5); K00995 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase id=1349961 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_280_trna_1
unknown

Not on your lists

11879..11951
DNA (73bp)
transferRNA
04302015_12_scaffold_280_trna_2
unknown

Not on your lists

12024..12094
DNA (71bp)
transferRNA
04302015_12_scaffold_280_trna_3
unknown

Not on your lists

12122..12205
DNA (84bp)
transferRNA
04302015_12_scaffold_280_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12354..12782
DNA (429bp) protein (143aa)
Ribosome maturation factor RimP id=1349962 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein; K09748 ribosome maturation factor RimP
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_280_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12804..14282
DNA (1479bp) protein (493aa)
peptidase M54 n=1 Tax=Thiobacillus thioparus RepID=UPI00037EA69E
NusA antitermination factor; K02600 N utilization substance protein A
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_280_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14299..17112
DNA (2814bp) protein (938aa)
translation initiation factor IF-2 n=1 Tax=Thiobacillus thioparus RepID=UPI000364F979
infB; translation initiation factor IF-2; K02519 translation initiation factor IF-2
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_280_17
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17112..17531
DNA (420bp) protein (140aa)
ribosome-binding factor A n=1 Tax=Thiobacillus thioparus RepID=UPI000372DC32
ribosome-binding factor A; K02834 ribosome-binding factor A
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_280_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17528..18493
DNA (966bp) protein (322aa)
tRNA pseudouridine synthase B (EC:4.2.1.70); K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25]
tRNA pseudouridine synthase B n=1 Tax=Thiobacillus thioparus RepID=UPI00037F3664 rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_280_19
RBG_16_Gallionellales_56_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18669..19316
DNA (648bp) protein (216aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium JGI 0001004-K23 RepID=UPI00036CC83D
LuxR family transcriptional regulator
Tax=RBG_16_Gallionellales_56_9_curated
04302015_12_scaffold_280_20
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19593..19856
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Thauera sp. 63 RepID=N6X5K6_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:ENO76991.1}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
prepilin protein
04302015_12_scaffold_280_21
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20108..21214
DNA (1107bp) protein (369aa)
Uncharacterized protein n=1 Tax=Thauera sp. 63 RepID=N6Y3P4_9RHOO rbh
Uncharacterized protein {ECO:0000313|EMBL:ENO76992.1}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
04302015_12_scaffold_280_22
unknown

Not on your lists

21433..22164
DNA (732bp) protein (244aa)

This feature has no annotations

04302015_12_scaffold_280_23
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22217..22927
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Thauera sp. 63 RepID=N6YAI6_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:ENO76994.1}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
hypothetical protein
04302015_12_scaffold_280_24
Methylophilaceae bacterium 11, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22924..23586
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Thauera terpenica 58Eu RepID=T0AMY4_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:EUJ09327.1}; Flags: Precursor;; TaxID=1101195 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae.;" source="Methylophila
hypothetical protein
04302015_12_scaffold_280_25
Methylophilaceae bacterium 11, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23583..23768
DNA (186bp) protein (62aa)
Uncharacterized protein n=2 Tax=Thauera RepID=N6YT31_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:EUJ09328.1}; TaxID=1101195 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae.;" source="Methylophilaceae bacterium 11.;
04302015_12_scaffold_280_26
Methylophilaceae bacterium 11, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23779..24633
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Thauera terpenica 58Eu RepID=S9ZL56_9RHOO rbh
Flp pilus assembly protein CpaB {ECO:0000313|EMBL:EUJ09329.1}; TaxID=1101195 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae.;" source="Methylophilaceae bacter
Flp pilus assembly protein CpaB; K02279 pilus assembly protein CpaB
04302015_12_scaffold_280_27
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24728..26209
DNA (1482bp) protein (494aa)
Type II and III secretion system protein n=1 Tax=Thauera sp. 63 RepID=N6Y4G4_9RHOO rbh
Type II and III secretion system protein {ECO:0000313|EMBL:ENO76998.1}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp
type II and III secretion system protein; K02280 pilus assembly protein CpaC rbh
Displaying items 1-30 of 105 in total

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