ggKbase home page

04302015_12_scaffold_1300

Search features with annotation key words

Displaying 17 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_12_scaffold_1300_1
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..279)
DNA (279bp) protein (93aa)
patatin n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI000288BF54
Patatin {ECO:0000313|EMBL:KKC27073.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
patatin
04302015_12_scaffold_1300_2
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(276..608)
DNA (333bp) protein (111aa)
endonuclease n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B57562
Uncharacterized protein {ECO:0000313|EMBL:AHE53867.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
endonuclease/exonuclease/phosphatase; K06896
04302015_12_scaffold_1300_trna_1
unknown

Not on your lists

comp(1069..1148)
DNA (80bp)
transferRNA
04302015_12_scaffold_1300_3
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1177..1959)
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CB165
Uncharacterized protein {ECO:0000313|EMBL:AHE52333.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
hypothetical protein rbh
04302015_12_scaffold_1300_4
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2034..2390)
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CB083
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH51345.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp
04302015_12_scaffold_1300_5
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2387..3751)
DNA (1365bp) protein (455aa)
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IHR1_9SPHN rbh
putative hydrolase rbh
Putative hydrolase {ECO:0000313|EMBL:BAK66834.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6
04302015_12_scaffold_1300_6
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3735..5048)
DNA (1314bp) protein (438aa)
ATPase AAA n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI0002885021 rbh
Sphingomonas taxi strain 30a NODE_6, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29485.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadac
ycaJ; putative ATPase; K07478 putative ATPase rbh
04302015_12_scaffold_1300_7
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5276..5731
DNA (456bp) protein (152aa)
PadR family transcripitonal regulator n=1 Tax=Sphingomonas echinoides RepID=UPI00026CAB59
DNA, contig: SP614 {ECO:0000313|EMBL:GAN12951.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucim
putative PadR family transcriptional regulator
04302015_12_scaffold_1300_8
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5753..6901)
DNA (1149bp) protein (383aa)
Glycosyl transferase, group 1 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G593_NOVAD
Putative glycosyltransferase {ECO:0000313|EMBL:GAO40358.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomo
group 1 glycosyl transferase
04302015_12_scaffold_1300_9
R_Brevundimonas_68_13, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6976..7680
DNA (705bp) protein (235aa)
glutathione S-transferase; K00799 glutathione S-transferase [EC:2.5.1.18]
glutathione S-transferase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CAB56 rbh
Tax=RIFCSPHIGHO2_12_FULL_Brevundimonas_68_13_curated
04302015_12_scaffold_1300_10
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7743..9116
DNA (1374bp) protein (458aa)
DNA repair protein RadA n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CB15D rbh
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas
radA; DNA repair protein RadA/Sms; K04485 DNA repair protein RadA/Sms rbh
04302015_12_scaffold_1300_11
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9162..9626
DNA (465bp) protein (155aa)
colicin V production protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CB15C
Colicin V production protein {ECO:0000313|EMBL:AJP72482.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomo
colicin V production protein; K03558 membrane protein required for colicin V production
04302015_12_scaffold_1300_12
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9623..10063
DNA (441bp) protein (147aa)
nitrogen-fixing protein NifU n=1 Tax=Sphingomonas echinoides RepID=UPI00026CAB52
Nitrogen-fixing protein NifU {ECO:0000313|EMBL:AJP72480.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomo
NifU-like protein
04302015_12_scaffold_1300_13
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10060..11739
DNA (1680bp) protein (560aa)
sodium/hydrogen exchanger n=1 Tax=Sphingomonas elodea RepID=UPI0002632148
Sodium:proton exchanger {ECO:0000313|EMBL:AJP72479.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
sodium/hydrogen exchanger; K11747 glutathione-regulated potassium-efflux system protein KefB
04302015_12_scaffold_1300_14
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11736..12074
DNA (339bp) protein (113aa)
membrane protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B4D6FD
Membrane protein {ECO:0000313|EMBL:AIT05328.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
04302015_12_scaffold_1300_15
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12098..13873)
DNA (1776bp) protein (592aa)
Metal-dependent hydrolase, beta-lactamase superfamily I n=1 Tax=Cyanobium gracile (strain ATCC 27147 / PCC 6307) RepID=K9P7N2_CYAGP rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO38067.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas c
beta-lactamase superfamily metal-dependent hydrolase rbh
04302015_12_scaffold_1300_16
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14159..14416)
DNA (258bp) protein (86aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=1549858 species="Bacteri
aroB; 3-dehydroquinate synthase; K01735 3-dehydroquinate synthase [EC:4.2.3.4]
3-dehydroquinate synthase n=1 Tax=Sphingomonas melonis RepID=UPI000375F1FC
Displaying 17 items

View Taxonomy