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04302015_12_scaffold_484

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_12_scaffold_484_1
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

210..938
DNA (729bp) protein (243aa)
chromosome partitioning protein ParA n=1 Tax=Sphingomonas echinoides RepID=UPI00026CD473 rbh
Chromosome partitioning protein ParA {ECO:0000313|EMBL:AJP72068.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="S
Cobyrinic acid ac-diamide synthase
04302015_12_scaffold_484_2
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

952..1689
DNA (738bp) protein (246aa)
Leucyl/phenylalanyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088489}; EC=2.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088482};; L/F-transf
aat; leucyl/phenylalanyl-tRNA--protein transferase (EC:2.3.2.6)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000380EC00 rbh
04302015_12_scaffold_484_3
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1494..2180)
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CD475
Uncharacterized protein {ECO:0000313|EMBL:EZP54677.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
hypothetical protein
04302015_12_scaffold_484_4
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2162..2554)
DNA (393bp) protein (131aa)
NADH dehydrogenase {ECO:0000313|EMBL:KHA65240.1}; EC=1.6.99.3 {ECO:0000313|EMBL:KHA65240.1};; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae;
putative NADH:ubiquinone oxidoreductase subunit; K00356 NADH dehydrogenase [EC:1.6.99.3]
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WYI8_9SPHN
04302015_12_scaffold_484_5
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2622..3125)
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CC574
Uncharacterized protein {ECO:0000313|EMBL:KHA65241.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp
hypothetical protein; K09005 hypothetical protein
04302015_12_scaffold_484_6
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3132..3752)
DNA (621bp) protein (207aa)
Cold-shock DNA-binding domain protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WYI6_9SPHN
Cold-shock protein {ECO:0000313|EMBL:AIT06538.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;
hypothetical protein
04302015_12_scaffold_484_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3891..4424)
DNA (534bp) protein (178aa)
regulatory protein RecX n=1 Tax=Sphingomonas echinoides RepID=UPI00026CD479
RecX family transcriptional regulator {ECO:0000313|EMBL:AJP72072.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="
hypothetical protein
04302015_12_scaffold_484_8
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4531..6306
DNA (1776bp) protein (592aa)
acyl-CoA synthetase n=1 Tax=Sphingomonas elodea RepID=UPI0002632126 rbh
DNA, contig: SP607 {ECO:0000313|EMBL:GAN12271.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucim
acyl-CoA synthetase rbh
04302015_12_scaffold_484_9
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6379..8739
DNA (2361bp) protein (787aa)
diguanylate cyclase n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI0002886FD2 rbh
Diguanylate cyclase {ECO:0000313|EMBL:AIT06541.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
04302015_12_scaffold_484_trna_1
unknown

Not on your lists

8813..8886
DNA (74bp)
transferRNA
04302015_12_scaffold_484_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9056..9253
DNA (198bp) protein (66aa)
preprotein translocase subunit SecE n=1 Tax=Sphingomonas echinoides RepID=UPI00026CD47D
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="S
preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE
04302015_12_scaffold_484_11

Not on your lists

9280..9819
DNA (540bp) protein (180aa)
transcription antitermination protein NusG n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B6187C rbh
Transcription termination factor nusG {ECO:0000313|EMBL:AGU12249.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
transcription antitermination protein nusG; K02601 transcriptional antiterminator NusG
04302015_12_scaffold_484_12
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9883..10341)
DNA (459bp) protein (153aa)
moaE; molybdenum cofactor biosynthesis protein E; K03635 molybdopterin synthase catalytic subunit [EC:2.-.-.-]
MoaE family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WT95_9SPHN
MoaE family protein {ECO:0000313|EMBL:EZP55567.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. R
04302015_12_scaffold_484_13
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10338..10595)
DNA (258bp) protein (86aa)
molybdenum cofactor biosynthesis protein MoaD n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030054C6
Molybdopterin synthase sulfur carrier subunit {ECO:0000256|RuleBase:RU362014}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;
molybdopterin converting factor subunit 1
04302015_12_scaffold_484_14
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10601..11152)
DNA (552bp) protein (184aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; K00995 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Sphingomonas melonis RepID=UPI000381A13F
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:KHA65615.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadace
04302015_12_scaffold_484_15
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11312..12628
DNA (1317bp) protein (439aa)
MFS transporter n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CB570 rbh
Major Facilitator Superfamily protein {ECO:0000313|EMBL:EZP51749.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="
putative MFS permease rbh
04302015_12_scaffold_484_16
unknown

Not on your lists

comp(12642..12833)
DNA (192bp) protein (64aa)

This feature has no annotations

04302015_12_scaffold_484_17
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13039..13749
DNA (711bp) protein (237aa)
PhoB family transcriptional regulator n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B326EC rbh
Response regulator {ECO:0000313|EMBL:EZP51658.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RI
two component transcriptional regulator rbh
04302015_12_scaffold_484_18
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13746..15059
DNA (1314bp) protein (438aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadacea
histidine kinase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B499FC rbh
integral membrane sensor signal transduction histidine kinase rbh
04302015_12_scaffold_484_19
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15287..16531)
DNA (1245bp) protein (415aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SB73_9SPHN rbh
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
FAD-dependent pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:AGH47917.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphi
04302015_12_scaffold_484_20
Asticcacaulis sp. AC402, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16653..17690)
DNA (1038bp) protein (346aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00219, ECO:0000256|RuleBase:RU003440}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00219};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00219, ECO:0000256|RuleBase:RU00
Dihydroorotase n=1 Tax=Asticcacaulis sp. AC402 RepID=V4QD76_9CAUL
dihydroorotase, homodimeric type
04302015_12_scaffold_484_21
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17855..18670)
DNA (816bp) protein (272aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B6F256 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGH48589.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp
04302015_12_scaffold_484_trna_2
unknown

Not on your lists

19088..19158
DNA (71bp)
transferRNA
04302015_12_scaffold_484_22
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19537..22566
DNA (3030bp) protein (1010aa)
putative adenylate/guanylate cyclase; K01768 adenylate cyclase [EC:4.6.1.1] rbh
Adenylate/guanylate cyclase with GAF and PAS/PAC sensors id=4884049 bin=GWA2_Elusimicrobia_69_24 species=Desulfovibrio salexigens genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia rbh
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
04302015_12_scaffold_484_23
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22587..23366)
DNA (780bp) protein (260aa)
molybdopterin-binding protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CC586 rbh
Molybdopterin-binding protein {ECO:0000313|EMBL:KHA65419.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomo
molybdopterin binding domain-containing protein rbh
04302015_12_scaffold_484_24
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23430..24260
DNA (831bp) protein (277aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974, ECO:0000313|EMBL:AJP71088.1}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {EC
map; methionyl aminopeptidase (EC:3.4.11.18); K01265 methionyl aminopeptidase [EC:3.4.11.18]
methionine aminopeptidase n=1 Tax=Sphingomonas elodea RepID=UPI0002631A45
04302015_12_scaffold_484_25
unknown

Not on your lists

comp(24264..24449)
DNA (186bp) protein (62aa)

This feature has no annotations

Displaying 27 items

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