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04302015_12_scaffold_543

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_12_scaffold_543_1
unknown

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360..515
DNA (156bp) protein (52aa)

This feature has no annotations

04302015_12_scaffold_543_2
unknown

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512..892
DNA (381bp) protein (127aa)

This feature has no annotations

04302015_12_scaffold_543_3
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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989..2515
DNA (1527bp) protein (509aa)
transcription elongation factor NusA n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC4C1 rbh
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sph
nusA; transcription elongation factor NusA rbh
04302015_12_scaffold_543_4
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2515..2757
DNA (243bp) protein (81aa)
Tautomerase {ECO:0000256|RuleBase:RU362032}; EC=5.3.2.- {ECO:0000256|RuleBase:RU362032};; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sph
hypothetical protein; K01821 4-oxalocrotonate tautomerase [EC:5.3.2.-]
isomerase n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI0002899424
04302015_12_scaffold_543_5
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2902..3648
DNA (747bp) protein (249aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI00028810C6 rbh
Transcription terminating nucleic-acid-binding protein {ECO:0000313|EMBL:KHA64463.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingom
hypothetical protein
04302015_12_scaffold_543_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3666..6326
DNA (2661bp) protein (887aa)
translation initiation factor IF-2 n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC4BE rbh
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000313|EMBL:AJP73294.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonada
infB; translation initiation factor IF-2; K02519 translation initiation factor IF-2 rbh
04302015_12_scaffold_543_7
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6674..7045
DNA (372bp) protein (124aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0003756235
Transcriptional regulator, XRE family {ECO:0000313|EMBL:CCW16670.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="S
XRE family transcriptional regulator
04302015_12_scaffold_543_8
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7042..7458
DNA (417bp) protein (139aa)
ribosome-binding factor A n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC0F9
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomo
rbfA; ribosome-binding factor A; K02834 ribosome-binding factor A
04302015_12_scaffold_543_9
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7458..8039
DNA (582bp) protein (194aa)
Thymidine kinase {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544}; EC=2.7.1.21 {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544};; TaxID=1219050 species="Bacteria; Prote
thymidine kinase; K00857 thymidine kinase [EC:2.7.1.21]
thymidine kinase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036FE0ED
04302015_12_scaffold_543_10
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8045..9115
DNA (1071bp) protein (357aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylat
tRNA pseudouridine synthase B; K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25]
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000380C24D rbh
04302015_12_scaffold_543_11
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9139..9408
DNA (270bp) protein (90aa)
30S ribosomal protein S15 n=1 Tax=Sphingomonas RepID=UPI0002899AFA
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; S
rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15
04302015_12_scaffold_543_12
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9586..11946
DNA (2361bp) protein (787aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=160997
pnp; polyribonucleotide nucleotidyltransferase; K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
polynucleotide phosphorylase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC0F2 rbh
04302015_12_scaffold_543_13
Paenibacillus sp. HGF7, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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12111..13178
DNA (1068bp) protein (356aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000
shikimate dehydrogenase; K00014 shikimate dehydrogenase [EC:1.1.1.25]
Shikimate dehydrogenase n=2 Tax=Paenibacillus RepID=F5LN84_9BACL
04302015_12_scaffold_543_14

Not on your lists

13175..13627
DNA (453bp) protein (151aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP99030.1}; TaxID=1618919 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_36_17.;"
id=3012477 bin=GWC1_OD1_38_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
04302015_12_scaffold_543_15
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13729..14916
DNA (1188bp) protein (396aa)
Major facilitator family transporter n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RGF7_PHEZH
Hexuronate transporter {ECO:0000313|EMBL:KIC56372.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas nas
major facilitator family transporter; K08191 MFS transporter, ACS family, hexuronate transporter
04302015_12_scaffold_543_16
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14926..15231)
DNA (306bp) protein (102aa)
ubiquinol-cytochrome C reductase n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000287B704
Ubiquinol-cytochrome C reductase {ECO:0000313|EMBL:AIT06051.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphin
hypothetical protein
Displaying 16 items

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