ggKbase home page

04302015_12_scaffold_2520

Search features with annotation key words

Displaying 18 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_12_scaffold_2520_1
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..377)
DNA (375bp) protein (125aa)
Uncharacterized protein {ECO:0000313|EMBL:AJA09810.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis f
04302015_12_scaffold_2520_2
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(503..1210)
DNA (708bp) protein (236aa)
NAD-dependent protein deacylase {ECO:0000256|HAMAP-Rule:MF_01121}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01121};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01121}; TaxID=745310 specie
hypothetical protein n=1 Tax=Sandarakinorhabdus limnophila RepID=UPI0003B6A5F9 rbh
NAD-dependent deacetylase
04302015_12_scaffold_2520_3
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1423..2106
DNA (684bp) protein (228aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rul
dihydrodipicolinate reductase (EC:1.3.1.26); K00215 dihydrodipicolinate reductase [EC:1.3.1.26]
dihydrodipicolinate reductase n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI0002891F61 rbh
04302015_12_scaffold_2520_4
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2103..2780
DNA (678bp) protein (226aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) l
endonuclease III; K10773 endonuclease III [EC:4.2.99.18]
endonuclease III n=1 Tax=Sphingomonas melonis RepID=UPI0003619840 rbh
04302015_12_scaffold_2520_5
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2783..3181
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Sphingomonas RepID=UPI0002897824
Uncharacterized protein {ECO:0000313|EMBL:AHE54587.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
hypothetical protein
04302015_12_scaffold_2520_trna_1
unknown

Not on your lists

3252..3325
DNA (74bp)
transferRNA
04302015_12_scaffold_2520_6
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3385..3630)
DNA (246bp) protein (82aa)
Ketodeoxygluconokinase n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4ZD00_9BRAD
ketodeoxygluconokinase
Ketodeoxygluconokinase {ECO:0000313|EMBL:BAM91708.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oli
04302015_12_scaffold_2520_7
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3643..4326)
DNA (684bp) protein (228aa)
2-dehydro-3-deoxygluconate kinase {ECO:0000313|EMBL:CCW19224.1}; EC=2.7.1.45 {ECO:0000313|EMBL:CCW19224.1};; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sph
2-dehydro-3-deoxygluconate kinase n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MR79_9SPHN
2-keto-3-deoxygluconate kinase
04302015_12_scaffold_2520_8
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4587..5999
DNA (1413bp) protein (471aa)
FAD linked oxidase domain-containing protein; K00102 D-lactate dehydrogenase (cytochrome) [EC:1.1.2.4]
FAD linked oxidase domain protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V5E9_SPHWW
FAD linked oxidase domain protein {ECO:0000313|EMBL:ABQ67515.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphin
04302015_12_scaffold_2520_9
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6041..6820)
DNA (780bp) protein (260aa)
ABC transporter-like protein; K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34]
hypothetical protein n=1 Tax=Blastomonas sp. AAP53 RepID=UPI00031AAF36 rbh
ABC transporter {ECO:0000313|EMBL:ESZ89010.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14
04302015_12_scaffold_2520_10
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6817..7734)
DNA (918bp) protein (306aa)
ABC transporter permease n=1 Tax=Blastomonas sp. AAP53 RepID=UPI0002DB16DC rbh
ABC transporter permease {ECO:0000313|EMBL:ESZ89009.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp
iron ABC transporter permease; K02015 iron complex transport system permease protein
04302015_12_scaffold_2520_11
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7746..8570)
DNA (825bp) protein (275aa)
UPI0003CFFC8E related cluster n=1 Tax=unknown RepID=UPI0003CFFC8E rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:ESZ89008.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" sourc
ABC transporter substrate binding protein; K02016 iron complex transport system substrate-binding protein
04302015_12_scaffold_2520_12
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8570..10507)
DNA (1938bp) protein (646aa)
UPI0003D03EBD related cluster n=1 Tax=unknown RepID=UPI0003D03EBD rbh
TonB-dependent receptor, plug; K02014 iron complex outermembrane recepter protein rbh
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
04302015_12_scaffold_2520_13
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11041..13350
DNA (2310bp) protein (770aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002D2DFEB
hypothetical protein
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
04302015_12_scaffold_2520_14
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13470..14645
DNA (1176bp) protein (392aa)
2Fe-2S ferredoxin n=1 Tax=Sphingomonas echinoides RepID=UPI00026C9331
2Fe-2S ferredoxin {ECO:0000313|EMBL:AJP71094.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHS
Rieske (2Fe-2S) protein
04302015_12_scaffold_2520_15
gamma proteobacterium NOR5-3, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15022..15495)
DNA (474bp) protein (158aa)
Sensors of blue-light using FAD family n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KLI1_9GAMM
Sensors of blue-light using FAD family {ECO:0000313|EMBL:EED31948.1}; TaxID=566466 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium NOR5-3.;"
BLUF domain-containing protein
04302015_12_scaffold_2520_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15640..17262
DNA (1623bp) protein (541aa)
FAD-dependent oxidoreductase n=1 Tax=Sphingomonas echinoides RepID=UPI00026C9332
Beta-carotene ketolase {ECO:0000313|EMBL:GAO53871.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
FAD dependent oxidoreductase
04302015_12_scaffold_2520_17
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17227..17601)
DNA (375bp) protein (125aa)
amino acid permease-associated protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026C9333
Uncharacterized protein {ECO:0000313|EMBL:AJP71092.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
amino acid permease
Displaying 18 items

View Taxonomy