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04302015_12_scaffold_3308

Search features with annotation key words

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_12_scaffold_3308_1
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..502)
DNA (501bp) protein (167aa)
permease n=1 Tax=Sphingomonas echinoides RepID=UPI00026CDABB
Permease {ECO:0000313|EMBL:AIT07553.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
04302015_12_scaffold_3308_2
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(583..960)
DNA (378bp) protein (126aa)
Putative PIN domain protein n=1 Tax=Thermus scotoductus (strain ATCC 700910 / SA-01) RepID=E8PQJ7_THESS
putative PIN domain-containing protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
04302015_12_scaffold_3308_3
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(960..1205)
DNA (246bp) protein (82aa)
UPI0003CFBEAC related cluster n=1 Tax=unknown RepID=UPI0003CFBEAC
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
04302015_12_scaffold_3308_4
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1289..1603)
DNA (315bp) protein (105aa)
Cation/cationic drug transporter n=1 Tax=Pseudomonas sp. GM79 RepID=J3IGV1_9PSED
Cation transporter {ECO:0000313|EMBL:AHE57380.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxan
small multidrug resistance protein
04302015_12_scaffold_3308_5
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1608..2735)
DNA (1128bp) protein (376aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184173};; 1-hydroxy-2-methyl-2
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1); K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1] rbh
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD00B rbh
04302015_12_scaffold_3308_6
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2856..4016
DNA (1161bp) protein (387aa)
membrane protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CDABF
Uncharacterized protein {ECO:0000313|EMBL:KGB58039.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis s
hypothetical protein rbh
04302015_12_scaffold_3308_7
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4013..4603
DNA (591bp) protein (197aa)
asparaginase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD00D
DNA, contig: SP657 {ECO:0000313|EMBL:GAN15427.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucim
isoaspartyl peptidase
04302015_12_scaffold_3308_8
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4560..4883
DNA (324bp) protein (108aa)
peptidase T2, asparaginase 2; K13051 beta-aspartyl-peptidase (threonine type) [EC:3.4.19.5]
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003748FBA
Asparaginase {ECO:0000313|EMBL:AIT07548.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
04302015_12_scaffold_3308_9
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4920..5801
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D2BFB7
Uncharacterized protein {ECO:0000313|EMBL:AJP73029.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
hypothetical protein
04302015_12_scaffold_3308_10
unknown

Not on your lists

comp(5805..5894)
DNA (90bp) protein (30aa)

This feature has no annotations

04302015_12_scaffold_3308_11
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5894..6916)
DNA (1023bp) protein (341aa)
Transcriptional regulator, AraC family n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8H0N9_CAUCN rbh
AraC family transcriptional regulator rbh
Transcriptional regulator, AraC family {ECO:0000313|EMBL:AAK22622.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Cau
04302015_12_scaffold_3308_12
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7003..7809
DNA (807bp) protein (269aa)
Uncharacterized protein n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8H0N8_CAUCN rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AAK22621.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter cresce
04302015_12_scaffold_3308_13
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7937..8209)
DNA (273bp) protein (91aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD00F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADJ24154.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium den
04302015_12_scaffold_3308_14
Jannaschia sp. CCS1, Jannaschia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8330..8563)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Jannaschia sp. (strain CCS1) RepID=Q28U18_JANSC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD53794.1}; TaxID=290400 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Jannaschia.;" source="Jannaschia sp. (str
Displaying 14 items

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