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04302015_12_scaffold_2

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Displaying items 1-30 of 245 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_12_scaffold_2_1
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(673..1863)
DNA (1191bp) protein (397aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:00002
tyrosyl-tRNA synthetase (EC:6.1.1.1); K01866 tyrosyl-tRNA synthetase [EC:6.1.1.1]
Tyrosine--tRNA ligase n=1 Tax=uncultured beta proteobacterium RepID=Q2Z0C1_9PROT rbh
04302015_12_scaffold_2_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2029..3345
DNA (1317bp) protein (439aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000371AF12 rbh
peptidase family protein
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_2_3
uncultured beta proteobacterium, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3342..4460
DNA (1119bp) protein (373aa)
Anhydro-N-acetylmuramic acid kinase {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085893}; EC=2.7.1.170 {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085888};; AnhMurNAc kinase {
anmK, ydhH; anhydro-N-acetylmuramic acid kinase; K09001 anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
anhydro-N-acetylmuramic acid kinase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036A220D
04302015_12_scaffold_2_4
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4529..4879)
DNA (351bp) protein (117aa)
HesB-like protein; K15724 iron-sulfur cluster insertion protein id=12494226 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
HesB-like protein; K15724 iron-sulfur cluster insertion protein
Putative iron-sulfur cluster insertion protein ErpA {ECO:0000255|HAMAP-Rule:MF_01380}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thioba
04302015_12_scaffold_2_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4969..5997)
DNA (1029bp) protein (343aa)
argC; N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38); K00145 N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI000379A797 rbh
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_2_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6100..6492)
DNA (393bp) protein (131aa)
rpsI; 30S ribosomal protein S9; K02996 small subunit ribosomal protein S9 id=12498490 bin=THIO_MID species=unknown genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
rpsI; 30S ribosomal protein S9; K02996 small subunit ribosomal protein S9
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_2_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6504..6944)
DNA (441bp) protein (147aa)
50S ribosomal protein L13 n=1 Tax=Thiobacillus denitrificans RepID=UPI000373A138
rplM; 50S ribosomal protein L13; K02871 large subunit ribosomal protein L13
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_2_8
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7021..7842
DNA (822bp) protein (274aa)
transmembrane protein id=12498488 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
transmembrane protein
Probable transmembrane protein {ECO:0000313|EMBL:AAZ96405.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobac
04302015_12_scaffold_2_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7839..8258
DNA (420bp) protein (140aa)
OsmC/Ohr family protein id=1360777 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
OsmC/Ohr family protein; K07397 putative redox protein
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_2_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8287..8487)
DNA (201bp) protein (67aa)
hypothetical protein id=12496723 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_2_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8534..9928)
DNA (1395bp) protein (465aa)
peptidase S1C, Do; K01362 [EC:3.4.21.-] id=12496722 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
peptidase S1C, Do; K01362 [EC:3.4.21.-]
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_2_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9933..10373)
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037E6CC8
putative positive regulator of sigma E activity; K03803 sigma-E factor negative regulatory protein RseC
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
04302015_12_scaffold_2_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10386..11339)
DNA (954bp) protein (318aa)
sigma E regulatory protein, MucB/RseB; K03598 sigma-E factor negative regulatory protein RseB id=12496720 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
sigma E regulatory protein, MucB/RseB; K03598 sigma-E factor negative regulatory protein RseB
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_2_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11339..11881)
DNA (543bp) protein (181aa)
hypothetical protein id=12496719 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_2_15
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11884..12480)
DNA (597bp) protein (199aa)
RNA polymerase sigma factor RpoE; K03088 RNA polymerase sigma-70 factor, ECF subfamily id=12496718 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
RNA polymerase sigma factor RpoE; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobaci
04302015_12_scaffold_2_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12619..14247
DNA (1629bp) protein (543aa)
L-aspartate oxidase (EC:1.4.3.16); K00278 L-aspartate oxidase [EC:1.4.3.16] id=12496717 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
L-aspartate oxidase (EC:1.4.3.16); K00278 L-aspartate oxidase [EC:1.4.3.16]
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_2_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14183..14614)
DNA (432bp) protein (144aa)
hypothetical protein id=12496716 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_2_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14635..15687
DNA (1053bp) protein (351aa)
glycine cleavage T-protein (aminomethyl transferase); K06980 id=12496715 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
glycine cleavage T-protein (aminomethyl transferase); K06980
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_2_19
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15688..15975
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000381116C
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
04302015_12_scaffold_2_20
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16034..17065)
DNA (1032bp) protein (344aa)
peptidoglycan-binding domain 1 protein id=12496713 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
peptidoglycan-binding domain 1 protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
04302015_12_scaffold_2_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17196..17558
DNA (363bp) protein (121aa)
sulfur relay protein, TusE/DsrC/DsvC family; K11179 tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-] id=12496712 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
sulfur relay protein, TusE/DsrC/DsvC family; K11179 tRNA 2-thiouridine synthesizing protein E [EC:2.8.1.-]
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_2_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17562..18629)
DNA (1068bp) protein (356aa)
alanine racemase (EC:5.1.1.1); K01775 alanine racemase [EC:5.1.1.1]
alanine racemase n=1 Tax=Thiobacillus thioparus RepID=UPI000374B462
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_2_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18634..20040)
DNA (1407bp) protein (469aa)
primary replicative DNA helicase (EC:3.6.1.-); K02314 replicative DNA helicase [EC:3.6.4.12] rbh
DnaB helicase id=1355425 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_2_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(20172..20621)
DNA (450bp) protein (150aa)
50S ribosomal protein L9P; K02939 large subunit ribosomal protein L9 id=12496709 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
50S ribosomal protein L9P; K02939 large subunit ribosomal protein L9
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_2_25
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(20632..20919)
DNA (288bp) protein (96aa)
30S ribosomal protein S18 n=1 Tax=Thiobacillus denitrificans RepID=UPI000378C76E
rpsR; 30S ribosomal protein S18; K02963 small subunit ribosomal protein S18
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
04302015_12_scaffold_2_26
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20923..21222)
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000365C3E5
restart primosome assembly protein PriB; K02686 primosomal replication protein N
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_2_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(21265..21648)
DNA (384bp) protein (128aa)
30S ribosomal protein S6 n=1 Tax=Thiobacillus thioparus RepID=UPI0003732C8A
rpsF; 30S ribosomal protein S6; K02990 small subunit ribosomal protein S6
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
04302015_12_scaffold_2_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21798..24035)
DNA (2238bp) protein (746aa)
ornithine decarboxylase (EC:4.1.1.17); K01584 arginine decarboxylase [EC:4.1.1.19]
lysine decarboxylase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036B1940 rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_2_29
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24338..24904)
DNA (567bp) protein (189aa)
dcd; deoxycytidine triphosphate deaminase (EC:3.5.4.13); K01494 dCTP deaminase [EC:3.5.4.13] id=12496704 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
dcd; deoxycytidine triphosphate deaminase (EC:3.5.4.13); K01494 dCTP deaminase [EC:3.5.4.13]
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
04302015_12_scaffold_2_30
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24904..25992)
DNA (1089bp) protein (363aa)
ATP-binding protein n=1 Tax=Thiobacillus thioparus RepID=UPI000372464D rbh
chromosome partitioning ATPase; K03593 ATP-binding protein involved in chromosome partitioning
Tax=GWE1_Thiobacillus_62_9_curated
Displaying items 1-30 of 245 in total

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