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04302015_12_scaffold_21

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Displaying items 1-30 of 158 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_12_scaffold_21_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..963
DNA (963bp) protein (321aa)
HrcA family transcriptional regulator n=1 Tax=Thiobacillus denitrificans RepID=UPI0003698727
hrcA; heat-inducible transcription repressor; K03705 heat-inducible transcriptional repressor
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
04302015_12_scaffold_21_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

960..2063
DNA (1104bp) protein (368aa)
hemH; ferrochelatase (EC:4.99.1.1); K01772 ferrochelatase [EC:4.99.1.1] rbh
Ferrochelatase id=1340296 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_21_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2303..2608
DNA (306bp) protein (102aa)
sulfide dehydrogenase (flavocytochrome), cytochrome c subunit (EC:1.-.-.-); K00540 [EC:1.-.-.-]
Putative cytochrome c553 id=1340297 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_21_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2625..3896
DNA (1272bp) protein (424aa)
sulfide dehydrogenase (flavocytochrome), flavoprotein subunit (EC:1.-.-.-); K00540 [EC:1.-.-.-]
Putative sulfide dehydrogenase flavocytochrome c oxidoreductase id=1340298 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_21_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4005..4409)
DNA (405bp) protein (135aa)
Fimbrial protein pilin id=1333523 bin=GWE1_T_denit_62_9 species=Nitrosomonas europaea genus=Nitrosomonas taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
prepilin-type N-terminal cleavage/methylation domain-containing protein
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_21_6
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4419..8282)
DNA (3864bp) protein (1288aa)
Type 4 fimbrial biogenesis protein PilY1 n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BTT7_9GAMM rbh
pilY1; type IV fimbrial biogenesis protein PilY1; K02674 type IV pilus assembly protein PilY1
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
04302015_12_scaffold_21_7
Methylomonas denitrificans, Methylomonas, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8301..8804)
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00037FADE2
Uncharacterized protein {ECO:0000313|EMBL:KHD30784.1}; TaxID=1538553 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomonas.;" source="Methylomonas den
Tfp pilus assembly protein PilX
04302015_12_scaffold_21_8
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8801..9763)
DNA (963bp) protein (321aa)
hypothetical protein n=1 Tax=Methylosarcina fibrata RepID=UPI000378EFEE
Type IV pilus assembly protein PilW {ECO:0000313|EMBL:EGW21553.1}; TaxID=697282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" source="Meth
hypothetical protein; K02672 type IV pilus assembly protein PilW
04302015_12_scaffold_21_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9760..10194)
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000370DFFE
type IV pilus modification protein PilV; K02671 type IV pilus assembly protein PilV
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_21_10
Nitrosomonas eutropha, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10191..10760)
DNA (570bp) protein (190aa)
Fimbrial pilin related signal peptide protein n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0AF12_NITEC
fimbrial pilin related signal peptide protein; K08084 type IV fimbrial biogenesis protein FimT
Fimbrial pilin related signal peptide protein {ECO:0000313|EMBL:ABI60070.1}; TaxID=335283 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" so
04302015_12_scaffold_21_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10903..11427)
DNA (525bp) protein (175aa)
type-4 fimbrial pilin related signal peptide protein; K08084 type IV fimbrial biogenesis protein FimT id=12497898 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
prepilin-type N-terminal cleavage/methylation domain-containing protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_21_12
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11533..12624
DNA (1092bp) protein (364aa)
putative D-amino acid oxidase; K03153 glycine oxidase [EC:1.4.3.19]
Putative D-amino acid oxidase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SEU3_THIDA
Putative D-amino acid oxidase {ECO:0000313|EMBL:AAZ97819.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.
04302015_12_scaffold_21_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12709..13638
DNA (930bp) protein (310aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037491F9
hypothetical protein; K07276 hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_21_14
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13620..14747
DNA (1128bp) protein (376aa)
glycosyl transferase n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D7C94
putative glycosyltransferase
Putative glycosyltransferase {ECO:0000313|EMBL:AAZ97821.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacil
04302015_12_scaffold_21_15
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14756..15568
DNA (813bp) protein (271aa)
Putative lipopolysaccharide core biosynthesis glycosyl transferase LpsC {ECO:0000313|EMBL:CDH44091.1}; EC=2.-.-.- {ECO:0000313|EMBL:CDH44091.1};; TaxID=1400861 species="Bacteria; Proteobacteria; Gamma
Putative lipopolysaccharide core biosynthesis glycosyl transferase LpsC n=1 Tax=mine drainage metagenome RepID=E6QQR2_9ZZZZ rbh
lipopolysaccharide core biosynthesis glycosyl transferase (KdtX)
04302015_12_scaffold_21_16
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15563..16660)
DNA (1098bp) protein (366aa)
heptosyltransferase family protein; K02843 heptosyltransferase II [EC:2.4.-.-] rbh
Heptosyltransferase family protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SHR3_THIDA rbh
Heptosyltransferase family protein {ECO:0000313|EMBL:AAZ97823.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thi
04302015_12_scaffold_21_17
Thioalkalivibrio thiocyanoxidans, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16768..17712
DNA (945bp) protein (315aa)
Putative uncharacterized protein n=1 Tax=Thioalkalivibrio thiocyanoxidans ARh 4 RepID=G4DKG2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AHE98520.1}; TaxID=713587 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkali
hypothetical protein
04302015_12_scaffold_21_18
Solemya velum gill symbiont, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17656..18717)
DNA (1062bp) protein (354aa)
Putative uncharacterized protein n=1 Tax=Thioalkalivibrio thiocyanoxidans ARh 4 RepID=G4DKG3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KHF24345.1}; TaxID=2340 species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="Solemya velum gill symbiont.;"
hypothetical protein
04302015_12_scaffold_21_19
unknown

Not on your lists

comp(18775..18978)
DNA (204bp) protein (68aa)

This feature has no annotations

04302015_12_scaffold_21_20
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19079..19930)
DNA (852bp) protein (284aa)
hypothetical protein n=1 Tax=Thioalkalivibrio RepID=UPI0003693502
Glycosyl transferase family protein {ECO:0000313|EMBL:EKF17393.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitr
glycosyl transferase
04302015_12_scaffold_21_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19957..21807)
DNA (1851bp) protein (617aa)
multidrug MFS transporter n=1 Tax=Thiobacillus thioparus RepID=UPI0003737E24
putative epimerase/dehydratase-like biosynthesis protein
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_21_22
Desulfotomaculum kuznetsovii, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21815..23035)
DNA (1221bp) protein (407aa)
glutamine--scyllo-inositol transaminase (EC:2.6.1.50) id=12497906 bin=THIO_MID species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=THIO_MID organism_group=Betaproteobacteria rbh
glutamine--scyllo-inositol transaminase (EC:2.6.1.50)
Glutamine--scyllo-inositol transaminase {ECO:0000313|EMBL:AEG15303.1}; EC=2.6.1.50 {ECO:0000313|EMBL:AEG15303.1};; TaxID=760568 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae
04302015_12_scaffold_21_23
Neisseria meningitidis, Neisseria, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23032..23592)
DNA (561bp) protein (187aa)
Bacterial transferase hexapeptide repeat protein {ECO:0000313|EMBL:EJU68488.1}; EC=2.-.-.- {ECO:0000313|EMBL:EJU68488.1};; TaxID=1069617 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseri
Bacterial transferase hexapeptide repeat protein n=10 Tax=Neisseria meningitidis RepID=J8X865_NEIME
putative acetyltransferase
04302015_12_scaffold_21_24
Pseudomonas sp. GM84, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23585..24211)
DNA (627bp) protein (209aa)
sugar transferase n=1 Tax=Halomonas sp. KM-1 RepID=UPI0002899C07
Glycosyl transferase possibly involved in lipopolysaccharide synthesis {ECO:0000313|EMBL:EJN37597.1}; TaxID=1144340 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonad
sugar transferase
04302015_12_scaffold_21_25
Halomonas anticariensis, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24211..25434)
DNA (1224bp) protein (408aa)
hypothetical protein n=1 Tax=Thioalkalivibrio versutus RepID=UPI0003765010 rbh
Uncharacterized protein {ECO:0000313|EMBL:EPC04202.1}; TaxID=1121939 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas anticarie
Glycosyltransferase rbh
04302015_12_scaffold_21_26
Oceanicola batsensis, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25452..26513)
DNA (1062bp) protein (354aa)
Uncharacterized protein n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3U2J8_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAQ01572.1}; TaxID=252305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola batsensi
04302015_12_scaffold_21_27
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26510..27355)
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Pseudomonas pseudoalcaligenes CECT 5344 RepID=I7K1Y4_PSEPS
Uncharacterized protein {ECO:0000313|EMBL:CDR90917.1}; TaxID=330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoal
hypothetical protein
04302015_12_scaffold_21_28
Wenxinia marina, Wenxinia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27550..28689)
DNA (1140bp) protein (380aa)
hypothetical protein n=1 Tax=Wenxinia marina RepID=UPI00037914F6
Plasmid pWENMAR1 Wenxma_22, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ71417.1}; TaxID=1123501 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Wenxin
hypothetical protein
04302015_12_scaffold_21_29
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(28700..29686)
DNA (987bp) protein (329aa)
sulfotransferase id=12497909 bin=THIO_MID species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
sulfotransferase
Tax=RBG_16_Planctomycetes_64_10_curated
04302015_12_scaffold_21_30
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30551..31201)
DNA (651bp) protein (217aa)
hisG; ATP phosphoribosyltransferase catalytic subunit (EC:2.4.2.17); K00765 ATP phosphoribosyltransferase [EC:2.4.2.17] id=12497912 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hisG; ATP phosphoribosyltransferase catalytic subunit (EC:2.4.2.17); K00765 ATP phosphoribosyltransferase [EC:2.4.2.17]
ATP phosphoribosyltransferase {ECO:0000255|HAMAP-Rule:MF_01018}; Short=ATP-PRT {ECO:0000255|HAMAP-Rule:MF_01018};; Short=ATP-PRTase {ECO:0000255|HAMAP-Rule:MF_01018};; EC=2.4.2.17 {ECO:0000255|HAMAP-R
Displaying items 1-30 of 158 in total

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