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04302015_12_scaffold_25

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Displaying items 1-30 of 190 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_12_scaffold_25_1
R_Curvibacter_63_18, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..216)
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KNS7_MESAW
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Curvibacter_63_18_curated
04302015_12_scaffold_25_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(522..1763)
DNA (1242bp) protein (414aa)
diaminopimelate decarboxylase (EC:4.1.1.20); K01586 diaminopimelate decarboxylase [EC:4.1.1.20] id=12495813 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
diaminopimelate decarboxylase (EC:4.1.1.20); K01586 diaminopimelate decarboxylase [EC:4.1.1.20]
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
04302015_12_scaffold_25_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1923..2231
DNA (309bp) protein (103aa)
CyaY protein; K06202 CyaY protein id=12495812 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
CyaY protein; K06202 CyaY protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
04302015_12_scaffold_25_4
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2238..2828
DNA (591bp) protein (197aa)
MarR family transcriptional regulator id=12495811 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
MarR family transcriptional regulator
Transcriptional Regulator, MarR family {ECO:0000313|EMBL:AAZ96181.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source=
04302015_12_scaffold_25_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2914..4305)
DNA (1392bp) protein (464aa)
argininosuccinate lyase (EC:4.3.2.1); K01755 argininosuccinate lyase [EC:4.3.2.1] id=12495810 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
argininosuccinate lyase (EC:4.3.2.1); K01755 argininosuccinate lyase [EC:4.3.2.1] rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
04302015_12_scaffold_25_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4323..5369
DNA (1047bp) protein (349aa)
two-component system sensor ATPase; K08082 two-component system, LytT family, sensor histidine kinase AlgZ [EC:2.7.13.3] id=12495809 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
two-component system sensor ATPase; K08082 two-component system, LytT family, sensor histidine kinase AlgZ [EC:2.7.13.3]
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
04302015_12_scaffold_25_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5326..6090
DNA (765bp) protein (255aa)
LytR/AlgR family transcriptional regulator; K08083 two-component system, LytT family, response regulator AlgR id=12495808 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
LytR/AlgR family transcriptional regulator; K08083 two-component system, LytT family, response regulator AlgR rbh
Response regulator receiver domain protein (CheY) {ECO:0000313|EMBL:AAZ96184.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus
04302015_12_scaffold_25_8
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6199..7086)
DNA (888bp) protein (296aa)
cbbP; phosphoribulokinase (EC:2.7.1.19); K00855 phosphoribulokinase [EC:2.7.1.19] id=12496452 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
cbbP; phosphoribulokinase (EC:2.7.1.19); K00855 phosphoribulokinase [EC:2.7.1.19] rbh
Phosphoribulokinase {ECO:0000313|EMBL:AAZ98400.1}; EC=2.7.1.19 {ECO:0000313|EMBL:AAZ98400.1};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae
04302015_12_scaffold_25_9
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7204..9147)
DNA (1944bp) protein (648aa)
Vanadium-dependent bromoperoxidase 1 n=1 Tax=Gracilaria changii RepID=L7YCT6_9FLOR
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AHE55031.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
04302015_12_scaffold_25_10
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9239..10204)
DNA (966bp) protein (322aa)
Transcriptional family n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MTX7_9BURK
Putative LuxR family transcriptional regulator {ECO:0000313|EMBL:EZP74054.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" s
hypothetical protein
04302015_12_scaffold_25_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10306..10791)
DNA (486bp) protein (162aa)
hypothetical protein id=12496453 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_25_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


10911..13475
DNA (2565bp) protein (855aa)
leuS; leucyl-tRNA synthetase (EC:6.1.1.4); K01869 leucyl-tRNA synthetase [EC:6.1.1.4] id=12496455 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
leuS; leucyl-tRNA synthetase (EC:6.1.1.4); K01869 leucyl-tRNA synthetase [EC:6.1.1.4]
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_25_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13472..13972
DNA (501bp) protein (167aa)
putative lipoprotein B transmembrane; K03643 LPS-assembly lipoprotein id=12496456 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
putative lipoprotein B transmembrane; K03643 LPS-assembly lipoprotein
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_25_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13974..15011
DNA (1038bp) protein (346aa)
DNA polymerase III subunit delta (EC:2.7.7.7); K02340 DNA polymerase III subunit delta [EC:2.7.7.7] id=12496457 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
DNA polymerase III subunit delta (EC:2.7.7.7); K02340 DNA polymerase III subunit delta [EC:2.7.7.7]
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_25_15
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15001..16278
DNA (1278bp) protein (426aa)
proA; gamma-glutamyl phosphate reductase (EC:1.2.1.41); K00147 glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] id=12496458 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
proA; gamma-glutamyl phosphate reductase (EC:1.2.1.41); K00147 glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] rbh
Gamma-glutamyl phosphate reductase {ECO:0000255|HAMAP-Rule:MF_00412}; Short=GPR {ECO:0000255|HAMAP-Rule:MF_00412};; EC=1.2.1.41 {ECO:0000255|HAMAP-Rule:MF_00412};; Glutamate-5-semialdehyde dehydrogena
04302015_12_scaffold_25_16
Desulfobulbus propionicus, Desulfobulbus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16282..16755
DNA (474bp) protein (158aa)
Putative uncharacterized protein n=1 Tax=Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3) RepID=E8RB62_DESPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADW18727.1}; TaxID=577650 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfobulbus.;" source="Desulfobulbus
04302015_12_scaffold_25_17
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16718..17422
DNA (705bp) protein (235aa)
nicotinate-nucleotide adenylyltransferase (EC:2.7.7.18); K00969 nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] id=12496459 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
nicotinate-nucleotide adenylyltransferase (EC:2.7.7.18); K00969 nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_25_18
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17419..17772
DNA (354bp) protein (118aa)
Iojap-like protein; K09710 ribosome-associated protein id=12496460 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Iojap-like protein; K09710 ribosome-associated protein
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Th
04302015_12_scaffold_25_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17809..18246
DNA (438bp) protein (146aa)
hypothetical protein; K00783 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] id=12496461 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein; K00783 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_25_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18266..18877
DNA (612bp) protein (204aa)
Maf-like protein Tbd_2438 id=1358718 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
maf; Maf-like protein; K06287 septum formation protein
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_25_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18945..20396
DNA (1452bp) protein (484aa)
RNAse G (EC:3.1.4.-); K08301 ribonuclease G [EC:3.1.26.-] id=12496463 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
RNAse G (EC:3.1.4.-); K08301 ribonuclease G [EC:3.1.26.-]
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_25_22
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20449..21072
DNA (624bp) protein (208aa)
3-methyladenine DNA glycosylase II (EC:3.2.2.21); K01247 DNA-3-methyladenine glycosylase II [EC:3.2.2.21] id=12496464 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
3-methyladenine DNA glycosylase II (EC:3.2.2.21); K01247 DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
3-methyladenine DNA glycosylase II {ECO:0000313|EMBL:AAZ98389.1}; EC=3.2.2.21 {ECO:0000313|EMBL:AAZ98389.1};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hyd
04302015_12_scaffold_25_23
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21080..22396)
DNA (1317bp) protein (439aa)
peptide methionine sulfoxide reductase (EC:1.8.4.11 1.8.4.12); K12267 peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12] id=12496467 bin=THIO_MID species=Allochromatium vinosum genus=Allochromatium taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
peptide methionine sulfoxide reductase (EC:1.8.4.11 1.8.4.6); K12267 peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12]
Peptide methionine sulfoxide reductase {ECO:0000313|EMBL:ABB41379.1}; EC=1.8.4.11 {ECO:0000313|EMBL:ABB41379.1};; Flags: Precursor;; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria
04302015_12_scaffold_25_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22479..23273)
DNA (795bp) protein (265aa)
exodeoxyribonuclease III (EC:3.1.11.2); K01142 exodeoxyribonuclease III [EC:3.1.11.2] id=12496468 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
exodeoxyribonuclease III (EC:3.1.11.2); K01142 exodeoxyribonuclease III [EC:3.1.11.2]
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_25_25
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23576..31297
DNA (7722bp) protein (2574aa)
Putative type I polyketide synthase WcbR n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82UT4_NITEU rbh
Putative type I polyketide synthase WcbR {ECO:0000313|EMBL:CAD85300.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source=
rkpA; type I polyketide synthase WcbR rbh
04302015_12_scaffold_25_26
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31294..32619
DNA (1326bp) protein (442aa)
Aminotransferases class-I n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82UT5_NITEU rbh
rkpG; class-I aminotransferase rbh
Aminotransferases class-I {ECO:0000313|EMBL:CAD85299.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas e
04302015_12_scaffold_25_27
Candidatus Accumulibacter sp. SK-11, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32874..34007
DNA (1134bp) protein (378aa)
hypothetical protein n=1 Tax=Comamonas testosteroni RepID=UPI0002F11618 rbh
Vi polysaccharide export inner membrane protein VexD {ECO:0000313|EMBL:EXI67528.1}; TaxID=1454000 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus
rkpR_bexC_ctrB; capsule polysaccharide biosynthesis rbh
04302015_12_scaffold_25_28
Candidatus Accumulibacter sp. SK-11, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34004..34801
DNA (798bp) protein (266aa)
Capsule polysaccharide export inner-membrane protein CtrC n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FX10_PHAMO rbh
Polysialic acid transport protein KpsM {ECO:0000313|EMBL:EXI67529.1}; TaxID=1454000 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacte
ctrC; capsule polysaccharide export inner-membrane protein ctrC; K09688 capsular polysaccharide transport system permease protein rbh
04302015_12_scaffold_25_29
Candidatus Accumulibacter sp. BA-92, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34798..35448
DNA (651bp) protein (217aa)
Capsule polysaccharide export ATP-binding protein CtrD n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FX09_PHAMO rbh
Polysialic acid transport ATP-binding protein KpsT {ECO:0000313|EMBL:EXI82411.1}; TaxID=1454003 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus A
rkpS_bexA_ctrD; capsule polysaccharide export ATP-binding protein rbh
04302015_12_scaffold_25_30
Legionella massiliensis, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35452..37005
DNA (1554bp) protein (518aa)
group 1 glycosyl transferase; K00754 [EC:2.4.1.-]
Glycosyl transferase, group 1 family protein n=1 Tax=alpha proteobacterium JLT2015 RepID=M2U5Y5_9PROT rbh
D-inositol-3-phosphate glycosyltransferase {ECO:0000313|EMBL:CEE13580.1}; Glycosyltransferase, family {ECO:0000313|EMBL:CDZ77842.1}; TaxID=1034943 species="Bacteria; Proteobacteria; Gammaproteobacteri
Displaying items 1-30 of 190 in total

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