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04302015_12_scaffold_50

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Displaying items 1-30 of 69 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_12_scaffold_50_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1587..2498
DNA (912bp) protein (304aa)
hypothetical protein id=12496844 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_50_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2547..3197)
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035EC897 rbh
anti-Sigm factor ChrR
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_50_3
unknown

Not on your lists

3399..3503
DNA (105bp) protein (35aa)

This feature has no annotations

04302015_12_scaffold_50_4
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3528..3812)
DNA (285bp) protein (95aa)
Plasmid maintenance system antidote protein, XRE family n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M2V8_GEODF
HigA protein (Antitoxin to HigB) {ECO:0000313|EMBL:CDM23115.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castella
XRE family transcriptional regulator
04302015_12_scaffold_50_5
GWD2_Desulfuromonadales_61_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3824..4102)
DNA (279bp) protein (93aa)
Proteic killer suppression protein n=4 Tax=Xylella fastidiosa RepID=B0U2L6_XYLFM
proteic killer suppression protein
Tax=GWD2_Desulfuromonadales_61_12_curated
04302015_12_scaffold_50_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4216..4437)
DNA (222bp) protein (74aa)
ribonucleotide-diphosphate reductase subunit beta (EC:1.17.4.1); K00526 ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
Ribonucleoside-diphosphate reductase subunit beta id=1328166 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_50_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4482..5330)
DNA (849bp) protein (283aa)
ribonucleotide-diphosphate reductase subunit beta (EC:1.17.4.1); K00526 ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] id=12496835 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
ribonucleotide-diphosphate reductase subunit beta (EC:1.17.4.1); K00526 ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_50_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5811..8735)
DNA (2925bp) protein (975aa)
ribonucleotide-diphosphate reductase subunit alpha (EC:1.17.4.1); K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] rbh
Ribonucleoside-diphosphate reductase id=1328165 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_50_9
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9231..11486
DNA (2256bp) protein (752aa)
hypothetical protein n=1 Tax=Methylosarcina fibrata RepID=UPI00037A609A rbh
Uncharacterized protein {ECO:0000313|EMBL:EWY35703.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella sti
adenylate/guanylate cyclase with Chase sensor rbh
04302015_12_scaffold_50_10
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(11562..12200)
DNA (639bp) protein (213aa)
Metal dependent phosphohydrolase n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NHJ7_ROSCS
metal dependent phosphohydrolase; K06950 uncharacterized protein
Metal dependent phosphohydrolase {ECO:0000313|EMBL:ABU56944.1}; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseif
04302015_12_scaffold_50_11
unknown

Not on your lists

comp(12344..13144)
DNA (801bp) protein (267aa)

This feature has no annotations

04302015_12_scaffold_50_12
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13209..16583)
DNA (3375bp) protein (1125aa)
TonB-dependent receptor n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GGI0_NITSI rbh
Uncharacterized protein {ECO:0000313|EMBL:KJB93387.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aer
TonB-dependent receptor rbh
04302015_12_scaffold_50_13
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16986..17579)
DNA (594bp) protein (198aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12FM5_POLSJ
two component LuxR family transcriptional regulator
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:ABE42667.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;"
04302015_12_scaffold_50_14
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17533..19218)
DNA (1686bp) protein (562aa)
Periplasmic sensor signal transduction histidine kinase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12FM6_POLSJ rbh
periplasmic sensor signal transduction histidine kinase rbh
Periplasmic sensor signal transduction histidine kinase {ECO:0000313|EMBL:ABE42666.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.
04302015_12_scaffold_50_15
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19552..21306
DNA (1755bp) protein (585aa)
glsA; glutaminase (EC:3.5.1.2); K01425 glutaminase [EC:3.5.1.2]
Cyclic nucleotide-binding protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DB71_9BACT
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
04302015_12_scaffold_50_16
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21459..22466
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ABB3_9PROT
hypothetical protein
Tax=GWA2_Rhodocyclales_65_20_curated
04302015_12_scaffold_50_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22689..22916
DNA (228bp) protein (76aa)
Uncharacterized protein id=1329022 bin=GWE1_T_denit_62_9 species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_50_18
Vibrio splendidus, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23232..24803)
DNA (1572bp) protein (524aa)
hypothetical protein; K07126 id=12496831 bin=THIO_MID species=Vibrio splendidus genus=Vibrio taxon_order=Vibrionales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
Uncharacterized protein {ECO:0000313|EMBL:EAP92103.1}; TaxID=314291 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio splendidus 12B01.;"
hypothetical protein
04302015_12_scaffold_50_19
Thioflavicoccus mobilis, Thioflavicoccus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24815..26569)
DNA (1755bp) protein (585aa)
hypothetical protein id=12496830 bin=THIO_MID species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=THIO_MID organism_group=Betaproteobacteria rbh
TonB family protein
TonB family protein {ECO:0000313|EMBL:AGA91509.1}; Flags: Precursor;; TaxID=765912 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thioflavicoccus.;" source="Thiof
04302015_12_scaffold_50_20
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26580..27002)
DNA (423bp) protein (141aa)
biopolymer transport protein id=12496829 bin=THIO_MID species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
biopolymer transport protein
Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
04302015_12_scaffold_50_21
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27004..27690)
DNA (687bp) protein (229aa)
MotA/TolQ/ExbB proton channel id=12496828 bin=THIO_MID species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
MotA/TolQ/ExbB proton channel
Tax=CG_Beta_01
04302015_12_scaffold_50_22
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27894..28748
DNA (855bp) protein (285aa)
formyltetrahydrofolate deformylase (EC:3.5.1.10); K01433 formyltetrahydrofolate deformylase [EC:3.5.1.10] id=12496827 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
formyltetrahydrofolate deformylase (EC:3.5.1.10); K01433 formyltetrahydrofolate deformylase [EC:3.5.1.10] rbh
Formyltetrahydrofolate deformylase {ECO:0000256|HAMAP-Rule:MF_01927}; EC=3.5.1.10 {ECO:0000256|HAMAP-Rule:MF_01927};; Formyl-FH(4) hydrolase {ECO:0000256|HAMAP-Rule:MF_01927}; TaxID=292415 species="Ba
04302015_12_scaffold_50_23
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28754..30307
DNA (1554bp) protein (518aa)
hypothetical protein id=12496826 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97931.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus d
04302015_12_scaffold_50_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30329..30922
DNA (594bp) protein (198aa)
tryptophan repressor binding protein; K03809 Trp repressor binding protein id=12496825 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
tryptophan repressor binding protein; K03809 Trp repressor binding protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_50_25
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30919..31266
DNA (348bp) protein (116aa)
hypothetical protein id=12496824 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_50_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31572..33107)
DNA (1536bp) protein (512aa)
2-isopropylmalate synthase (EC:2.3.3.13); K01649 2-isopropylmalate synthase [EC:2.3.3.13] id=12496823 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
2-isopropylmalate synthase (EC:2.3.3.13); K01649 2-isopropylmalate synthase [EC:2.3.3.13]
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_50_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33446..34603)
DNA (1158bp) protein (386aa)
serine-type D-ala-D-ala-carboxypeptidase (EC:3.4.16.4); K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Thiobacillus denitrificans RepID=UPI000379D3C2 rbh
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_50_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34753..36063
DNA (1311bp) protein (437aa)
Na+/H+-glutamate/aspartate symport protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SL20_THIDA rbh
Na+/H+ - glutamate/aspartate symport protein; K03309 dicarboxylate/amino acid:cation (Na+ or H+) symporter, DAACS family rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_50_29
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36067..37080
DNA (1014bp) protein (338aa)
dihydroorotate dehydrogenase 2 (EC:1.3.3.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]
Dihydroorotate dehydrogenase (quinone) id=1367850 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_50_30
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37077..38336
DNA (1260bp) protein (420aa)
hypothetical protein id=12498103 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
hypothetical protein rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Displaying items 1-30 of 69 in total

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