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04302015_12_scaffold_96

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Displaying items 1-30 of 63 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_12_scaffold_96_1
unknown

Not on your lists

comp(3..71)
DNA (69bp) protein (23aa)

This feature has no annotations

04302015_12_scaffold_96_2
Pseudomonas sp. MT-1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

224..1201
DNA (978bp) protein (326aa)
integron integrase id=12497495 bin=THIO_MID species=Methylohalobius crimeensis genus=Methylohalobius taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
Integron integrase {ECO:0000313|EMBL:BAP78378.1}; TaxID=150396 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. MT-1.;"
integron integrase
04302015_12_scaffold_96_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1232..2083
DNA (852bp) protein (284aa)
hypothetical protein; K15270 S-adenosylmethionine uptake transporter id=12497494 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
hypothetical protein; K15270 S-adenosylmethionine uptake transporter
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_96_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2114..2482
DNA (369bp) protein (123aa)
hypothetical protein id=12497493 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
04302015_12_scaffold_96_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2479..2868
DNA (390bp) protein (130aa)
id=12497492 bin=THIO_MID tax=THIO_MID organism_group=Betaproteobacteria
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_96_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2843..3595)
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037092A4
putative transmembrane protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_96_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3632..4597)
DNA (966bp) protein (322aa)
prolyl aminopeptidase (EC:3.4.11.5); K01259 proline iminopeptidase [EC:3.4.11.5] id=12497489 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
prolyl aminopeptidase (EC:3.4.11.5); K01259 proline iminopeptidase [EC:3.4.11.5]
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_96_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5121..5510
DNA (390bp) protein (130aa)
Putative uncharacterized protein id=1363609 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_96_9
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5527..6621
DNA (1095bp) protein (365aa)
histidine kinase n=1 Tax=Thiobacillus thioparus RepID=UPI00035F2F6C
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
04302015_12_scaffold_96_10
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6647..6910
DNA (264bp) protein (88aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037E18B3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96843.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus d
04302015_12_scaffold_96_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6935..9121
DNA (2187bp) protein (729aa)
diguanylate cyclase/phosphodiesterase id=12495183 bin=THIO_HI species=unknown genus=Methylotenera taxon_order=Methylophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
diguanylate cyclase/phosphodiesterase rbh
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_96_12
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9184..10161)
DNA (978bp) protein (326aa)
C4-dicarboxylate transporter/malic acid transport protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J6F3_POLGS
C4-dicarboxylate transporter/malic acid transport protein; K03304 tellurite resistance/dicarboxylate transporter, TDT family
Tax=GWC2_Geobacteraceae_58_44_curated
04302015_12_scaffold_96_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10211..10948)
DNA (738bp) protein (246aa)
Zinc/iron permease id=1359577 bin=GWE1_T_denit_62_9 species=Methylomicrobium alcaliphilum genus=Methylomicrobium taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
zinc/iron permease rbh
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_96_14
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11049..11828)
DNA (780bp) protein (260aa)
Putative uncharacterized protein n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L003_HALNC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACX96026.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacil
04302015_12_scaffold_96_15
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11853..12779)
DNA (927bp) protein (309aa)
Dipeptidyl aminopeptidases/acylaminoacyl-peptidases-like protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VR47_POLNA
dipeptidyl aminopeptidases/acylaminoacyl-peptidases-like protein
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
04302015_12_scaffold_96_16
endosymbiont of Riftia pachyptila, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12809..13408)
DNA (600bp) protein (200aa)
Rhodanese-like protein n=2 Tax=sulfur-oxidizing symbionts RepID=G2DF06_9GAMM
Rhodanese-like protein {ECO:0000313|EMBL:EGV50779.1}; TaxID=1048808 species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="endosymbiont of Riftia pachyptila (ven
rhodanese-like protein
04302015_12_scaffold_96_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13583..14017)
DNA (435bp) protein (145aa)
Conserved hypothetical globin-like protein id=1359578 bin=GWE1_T_denit_62_9 species=Thauera linaloolentis genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein; K06886 hemoglobin
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_96_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14027..14311)
DNA (285bp) protein (95aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036C0FA1
Cyd operon protein YbgE (Cyd_oper_YbgE) family protein
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_96_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14308..15456)
DNA (1149bp) protein (383aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase id=1359580 bin=GWE1_T_denit_62_9 species=unknown genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Sulfide-quinone reductase rbh
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_96_20
Solemya velum gill symbiont, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15467..15964)
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00036FC4F0
Uncharacterized protein {ECO:0000313|EMBL:KHF25014.1}; TaxID=2340 species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="Solemya velum gill symbiont.;"
hypothetical protein
04302015_12_scaffold_96_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16001..16132)
DNA (132bp) protein (44aa)
cyd operon protein YbgT
cyd operon protein YbgT id=12497481 bin=THIO_MID species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_96_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16143..16556)
DNA (414bp) protein (138aa)
Uncharacterized protein id=1359582 bin=GWE1_T_denit_62_9 species=Pseudomonas stutzeri genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_96_23
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16566..17702)
DNA (1137bp) protein (379aa)
cytochrome d ubiquinol oxidase, subunit II; K00426 cytochrome d ubiquinol oxidase subunit II [EC:1.10.3.-]
Cytochrome d ubiquinol oxidase, subunit II id=1359583 bin=GWE1_T_denit_62_9 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_96_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17716..19302)
DNA (1587bp) protein (529aa)
cytochrome bd ubiquinol oxidase subunit I; K00425 cytochrome d ubiquinol oxidase subunit I [EC:1.10.3.-] id=12497479 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
cytochrome bd ubiquinol oxidase subunit I; K00425 cytochrome d ubiquinol oxidase subunit I [EC:1.10.3.-]
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_96_25
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19292..19501)
DNA (210bp) protein (70aa)
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_96_26
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19664..20965
DNA (1302bp) protein (434aa)
Fis family transcriptional regulator n=1 Tax=Thiobacillus denitrificans RepID=UPI00037C6AC1
transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_96_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20971..21765)
DNA (795bp) protein (265aa)
hypothetical protein id=12497476 bin=THIO_MID species=unknown genus=unknown taxon_order=unknown taxon_class=Zetaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_96_28
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21806..22180)
DNA (375bp) protein (125aa)
transmembrane region and signal peptide prediction id=12497475 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
transmembrane region and signal peptide prediction
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_96_29

Not on your lists

comp(22355..24985)
DNA (2631bp) protein (877aa)
aconitate hydratase 1; K01681 aconitate hydratase 1 [EC:4.2.1.3] id=12497474 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
Aconitate hydratase (Citrate hydro-lyase) (Aconitase) {ECO:0000313|EMBL:CBI09861.1}; EC=4.2.1.3 {ECO:0000313|EMBL:CBI09861.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological me
acnA2; aconitate hydratase (EC:4.2.1.3); K01681 aconitate hydratase 1 [EC:4.2.1.3]
04302015_12_scaffold_96_30
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25073..26578)
DNA (1506bp) protein (502aa)
lysyl-tRNA synthetase, class-2; K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6]
lysyl-tRNA synthetase n=1 Tax=Thiobacillus thioparus RepID=UPI0003717441 rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying items 1-30 of 63 in total

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