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04302015_12_scaffold_277

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_12_scaffold_277_1
Magnetococcus marinus, Magnetococcus, Magnetococcales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..844
DNA (843bp) protein (281aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALSr1 RepID=UPI00036D5773
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABK43586.1}; TaxID=156889 species="Bacteria; Proteobacteria; Alphaproteobacteria; Magnetococcales; Magnetococcaceae; Magnetococcus.;" source="Magnetococcus ma
04302015_12_scaffold_277_2
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1313..3136
DNA (1824bp) protein (608aa)
mnmC, trmC, yfcK; 5-methylaminomethyl-2-thiouridine methyltransferase; K15461 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-] id=12498504 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
mnmC, trmC, yfcK; 5-methylaminomethyl-2-thiouridine methyltransferase; K15461 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC {ECO:0000255|HAMAP-Rule:MF_01102}; Short=tRNA mnm(5)s(2)U biosynthesis bifunctional protein {ECO:0000255|HAMAP-Rule:MF_011
04302015_12_scaffold_277_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3290..4099)
DNA (810bp) protein (270aa)
GTP cyclohydrolase (EC:3.5.4.16); K09007 hypothetical protein id=12497505 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
GTP cyclohydrolase (EC:3.5.4.16); K09007 hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_277_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4196..6058)
DNA (1863bp) protein (621aa)
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7); K01662 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Thiobacillus thioparus RepID=UPI00036A610D
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
04302015_12_scaffold_277_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6061..6948)
DNA (888bp) protein (296aa)
farnesyl-diphosphate synthase (EC:2.5.1.10); K00795 farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
geranyltranstransferase n=1 Tax=Thiobacillus thioparus RepID=UPI0003789D6B
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
04302015_12_scaffold_277_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6941..7204)
DNA (264bp) protein (88aa)
exodeoxyribonuclease VII small subunit (EC:3.1.11.6); K03602 exodeoxyribonuclease VII small subunit [EC:3.1.11.6] id=12497502 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
exodeoxyribonuclease VII small subunit (EC:3.1.11.6); K03602 exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclea
04302015_12_scaffold_277_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7443..8555
DNA (1113bp) protein (371aa)
Rieske iron-sulfur protein 2Fe-2S subunit id=12497501 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
Rieske iron-sulfur protein 2Fe-2S subunit
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
04302015_12_scaffold_277_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8708..9163)
DNA (456bp) protein (152aa)
bacterioferritin comigratory protein; K03564 peroxiredoxin Q/BCP [EC:1.11.1.15] id=12497386 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
bacterioferritin comigratory protein; K03564 peroxiredoxin Q/BCP [EC:1.11.1.15]
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
04302015_12_scaffold_277_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9173..9829)
DNA (657bp) protein (219aa)
hypothetical protein id=12497385 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_277_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9854..10810)
DNA (957bp) protein (319aa)
thioredoxin reductase (EC:1.8.1.9); K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] rbh
Thioredoxin reductase id=1348793 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_277_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11227..13455
DNA (2229bp) protein (743aa)
cell division protein FtsK n=1 Tax=Thiobacillus denitrificans RepID=UPI000376A5D2 rbh
DNA translocase FtsK; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family rbh
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_277_12
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13452..14153
DNA (702bp) protein (234aa)
4-diphosphocytidyl-2C-methyl-D-erythritol synthase; K00991 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] id=12497382 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
4-diphosphocytidyl-2C-methyl-D-erythritol synthase; K00991 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
04302015_12_scaffold_277_13
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14178..14660
DNA (483bp) protein (161aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12); K01770 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] id=12497381 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12); K01770 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000255|HAMAP-Rule:MF_00107}; Short=MECDP-synthase {ECO:0000255|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000255|HAMAP-Rule:MF_00107}
04302015_12_scaffold_277_14
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14653..15213
DNA (561bp) protein (187aa)
2',5' RNA ligase; K01975 2'-5' RNA ligase [EC:6.5.1.-] id=12497380 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
2',5' RNA ligase; K01975 2'-5' RNA ligase [EC:6.5.1.-]
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
04302015_12_scaffold_277_15
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


15318..15629
DNA (312bp) protein (104aa)
50S ribosomal protein L21P; K02888 large subunit ribosomal protein L21 id=12497029 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
50S ribosomal protein L21P; K02888 large subunit ribosomal protein L21
50S ribosomal protein L21 {ECO:0000255|HAMAP-Rule:MF_01363}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobaci
04302015_12_scaffold_277_16
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


15642..15905
DNA (264bp) protein (88aa)
50S ribosomal protein L27 n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=RL27_THIDA
rpmA; 50S ribosomal protein L27; K02899 large subunit ribosomal protein L27
50S ribosomal protein L27 {ECO:0000255|HAMAP-Rule:MF_00539}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobaci
04302015_12_scaffold_277_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15987..17018
DNA (1032bp) protein (344aa)
GTPase CgtA n=1 Tax=Thiobacillus thioparus RepID=UPI000369B421 rbh
obgE, cgtA, obg, yhbZ; GTPase ObgE; K03979 GTP-binding protein
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_277_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17094..18575
DNA (1482bp) protein (494aa)
phospholipase D/transphosphatidylase id=12498132 bin=THIO_MID species=unknown genus=Methylotenera taxon_order=Methylophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
phospholipase D/transphosphatidylase rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_277_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18595..20319
DNA (1725bp) protein (575aa)
putative adenylate/guanylate cyclase; K01768 adenylate cyclase [EC:4.6.1.1] id=12498133 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
putative adenylate/guanylate cyclase; K01768 adenylate cyclase [EC:4.6.1.1]
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_277_20
Candidatus Accumulibacter sp. SK-02, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20329..20982)
DNA (654bp) protein (218aa)
GCN5-related N-acetyltransferase n=1 Tax=mine drainage metagenome RepID=E6QDC7_9ZZZZ
Aminoalkylphosphonic acid N-acetyltransferase {ECO:0000313|EMBL:KFB75952.1}; TaxID=1453999 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumu
GCN5-like N-acetyltransferase
04302015_12_scaffold_277_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20982..21299)
DNA (318bp) protein (106aa)
Putative addiction module antidote protein id=1326775 bin=GWE1_T_denit_62_9 species=Burkholderiales bacterium JOSHI_001 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
transcriptional regulator
Tax=GWE1_Thiobacillus_62_9_curated
04302015_12_scaffold_277_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21304..21582)
DNA (279bp) protein (93aa)
hypothetical protein id=12498136 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_12_scaffold_277_23
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21665..22828)
DNA (1164bp) protein (388aa)
major facilitator superfamily protein id=12498137 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
major facilitator superfamily protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
04302015_12_scaffold_277_trna_2
unknown

Not on your lists

comp(22966..23038)
DNA (73bp)
transferRNA
04302015_12_scaffold_277_24
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23072..24460)
DNA (1389bp) protein (463aa)
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17); K01885 glutamyl-tRNA synthetase [EC:6.1.1.17] rbh
Glutamate--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000255|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00022}; Short=GluRS {ECO:0000255|HAMAP-Rul
glutamyl-tRNA synthetase n=1 Tax=Thiobacillus thioparus RepID=UPI0003823A79
04302015_12_scaffold_277_trna_1
unknown

Not on your lists

24558..24629
DNA (72bp)
transferRNA
04302015_12_scaffold_277_25
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24709..26169
DNA (1461bp) protein (487aa)
DEAD/DEAH box helicase; K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13] id=12498368 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
DEAD/DEAH box helicase; K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
ATP-dependent RNA helicase RhlE {ECO:0000256|HAMAP-Rule:MF_00968}; EC=3.6.4.13 {ECO:0000256|HAMAP-Rule:MF_00968};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales
04302015_12_scaffold_277_26
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26315..27814
DNA (1500bp) protein (500aa)
hypothetical protein id=12498364 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AAZ97685.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus d
04302015_12_scaffold_277_27
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28165..28455
DNA (291bp) protein (97aa)
XRE family transcriptional regulator n=1 Tax=Dyella ginsengisoli RepID=UPI000344FA0C
Pirin {ECO:0000313|EMBL:KGO99441.1}; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DS
hypothetical protein
04302015_12_scaffold_277_28
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28522..28782
DNA (261bp) protein (87aa)
NAD(P)H-flavin oxidoreductase id=12498363 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
NAD(P)H-flavin oxidoreductase
NAD(P)H-flavin oxidoreductase {ECO:0000313|EMBL:AAZ97684.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobaci
Displaying 30 items

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