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04302015_12_scaffold_1348

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_12_scaffold_1348_1
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..2050
DNA (2049bp) protein (683aa)
hypothetical protein n=1 Tax=Thiomicrospira halophila RepID=UPI00037B71B9 rbh
two-component system sensor protein
Tax=CG_Thiomicrospira_01
04302015_12_scaffold_1348_2
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2125..3222)
DNA (1098bp) protein (366aa)
chorismate mutase; K14170 chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
Chorismate mutase n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DAT3_9GAMM rbh
Prephenate dehydratase {ECO:0000313|EMBL:AHF01211.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkali
04302015_12_scaffold_1348_3
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3228..4301)
DNA (1074bp) protein (358aa)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160, ECO:0000256|RuleBase:RU004505}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160, ECO:0000256|RuleBase:RU004505};; Phosphohydroxythreonine
phosphoserine aminotransferase (EC:2.6.1.52); K00831 phosphoserine aminotransferase [EC:2.6.1.52]
Phosphoserine aminotransferase n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DAT2_9GAMM rbh
04302015_12_scaffold_1348_4
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4317..6953)
DNA (2637bp) protein (879aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickett
DNA gyrase subunit A; K02469 DNA gyrase subunit A [EC:5.99.1.3] rbh
DNA gyrase subunit A n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DAT1_9GAMM rbh
04302015_12_scaffold_1348_5
endosymbiont of unidentified scaly snail isolate Monju, Gammaproteobacteria, Proteobacteria, Bacteria

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7083..7526
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6BPZ5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:BAN68084.1}; TaxID=1248727 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="endosymbiont of unidentified scaly snail isolate Monju.;"
17 kDa surface antigen
04302015_12_scaffold_1348_6
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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7526..8230
DNA (705bp) protein (235aa)
hypothetical protein n=1 Tax=Thiomicrospira halophila RepID=UPI000364B43B
Ubiquinone biosynthesis O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472, ECO:0000256|SAAS:SAAS00063564}; 2-polyprenyl-6-hydroxyphenol methylase {ECO:0000256|HAMAP-Rule:MF_00472}; 3-demethylubiqui
ubiG; ubiquinone biosynthesis O-methyltransferase
04302015_12_scaffold_1348_7
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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8272..8943
DNA (672bp) protein (224aa)
Phosphoglycolate phosphatase {ECO:0000256|SAAS:SAAS00077902}; EC=3.1.3.18 {ECO:0000256|SAAS:SAAS00077902};; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotric
gph; phosphoglycolate phosphatase (EC:3.1.3.18); K01091 phosphoglycolate phosphatase [EC:3.1.3.18]
hypothetical protein n=1 Tax=Thiothrix flexilis RepID=UPI00037B21F9
04302015_12_scaffold_1348_8
unknown

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8940..9602
DNA (663bp) protein (221aa)

This feature has no annotations

04302015_12_scaffold_1348_9
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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9752..10249
DNA (498bp) protein (166aa)
Uncharacterized ACR, COG1434 family n=1 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=Q2S202_SALRD
hypothetical protein
Uncharacterized ACR, COG1434 family {ECO:0000313|EMBL:ABC44208.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salin
04302015_12_scaffold_1348_10
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

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10242..10568
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Cylindrospermum stagnale PCC 7417 RepID=K9WZR1_9NOST
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KIF21260.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
04302015_12_scaffold_1348_11
R_Gammaproteobacteria_60_43, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10559..11308)
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Thiomicrospira halophila RepID=UPI00037F28EA
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Gammaproteobacteria_60_43_curated
04302015_12_scaffold_1348_12
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11365..12369)
DNA (1005bp) protein (335aa)
bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; K03272 D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
Bifunctional protein HldE {ECO:0000255|HAMAP-Rule:MF_01603}; Includes:; D-beta-D-heptose 7-phosphate kinase {ECO:0000255|HAMAP-Rule:MF_01603}; EC=2.7.1.167 {ECO:0000255|HAMAP-Rule:MF_01603};; D-beta-D
Bifunctional protein HldE n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DC63_9GAMM rbh
04302015_12_scaffold_1348_13
Shewanella amazonensis, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12318..12659)
DNA (342bp) protein (114aa)
bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; K03272 D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
Bifunctional protein HldE {ECO:0000255|HAMAP-Rule:MF_01603}; Includes:; D-beta-D-heptose 7-phosphate kinase {ECO:0000255|HAMAP-Rule:MF_01603}; EC=2.7.1.167 {ECO:0000255|HAMAP-Rule:MF_01603};; D-beta-D
Bifunctional protein HldE n=1 Tax=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) RepID=HLDE_SHEAM
04302015_12_scaffold_1348_14
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12722..13360
DNA (639bp) protein (213aa)
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI0003805AEA
Uncharacterized protein {ECO:0000313|EMBL:KDN96505.1}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibri
hypothetical protein
04302015_12_scaffold_1348_15
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13375..13674
DNA (300bp) protein (100aa)
3-deoxy-D-manno-octulosonic-acid transferase; K02527 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
3-deoxy-D-manno-octulosonic acid transferase n=1 Tax=Aquaspirillum serpens RepID=UPI0003B66089
Tax=CG_Thiomicrospira_01
Displaying 15 items

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