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04302015_12_scaffold_656

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Displaying 17 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_12_scaffold_656_1
Nitrincola sp. AK23, Nitrincola, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..369)
DNA (369bp) protein (123aa)
coproporphyrinogen III oxidase; K00228 coproporphyrinogen III oxidase [EC:1.3.3.3]
coproporphyrinogen III oxidase n=1 Tax=Gilvimarinus chinensis RepID=UPI00036DC345
Oxygen-dependent coproporphyrinogen-III oxidase {ECO:0000256|HAMAP-Rule:MF_00333}; Short=CPO {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coprogen oxidase {ECO:0000256|HAMAP-Rule:MF_00333};; Short=Coprop
04302015_12_scaffold_656_2
Sedimenticola sp. SIP-G1, Sedimenticola, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(381..695)
DNA (315bp) protein (105aa)
Putative uncharacterized protein n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31EB9_THICR
Uncharacterized protein {ECO:0000313|EMBL:AKH21938.1}; TaxID=1543721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Sedimenticola.;" source="Sedimenticola sp. SIP-G1.;"
hypothetical protein
04302015_12_scaffold_656_3
CG_Hydro_01, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(708..1520)
DNA (813bp) protein (271aa)
UDP pyrophosphate phosphatase (EC:3.6.1.27); K06153 undecaprenyl-diphosphatase [EC:3.6.1.27]
Undecaprenyl-diphosphatase n=1 Tax=Thauera phenylacetica B4P RepID=N6ZL25_9RHOO
Tax=CG_Hydro_01
04302015_12_scaffold_656_4
unknown

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comp(1522..2283)
DNA (762bp) protein (254aa)

This feature has no annotations

04302015_12_scaffold_656_5
Burkholderia sp. YI23, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2304..3035)
DNA (732bp) protein (244aa)
Preprotein translocase, SecA subunit n=1 Tax=Burkholderia sp. YI23 RepID=G8MNP2_9BURK
secA; Preprotein translocase subunit SecA; K07039 uncharacterized protein
Preprotein translocase, SecA subunit {ECO:0000313|EMBL:AET94431.1}; TaxID=1097668 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burk
04302015_12_scaffold_656_6
Pantoea sp. PSNIH2, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3032..3586)
DNA (555bp) protein (185aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|HAMAP-Rule:MF_01852, ECO:0000256|SAAS:SAAS00012127}; Short=TC-AMP synthase {ECO:0000256|HAMAP-Rule:MF_01852};; EC=2.7.7.87 {ECO:0000256|HAMAP-Rule:MF_01852,
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000376DF98
rimN; tRNA (ANN) t(6)A37 threonylcarbamoyladenosine biosynthesis protein; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein
04302015_12_scaffold_656_7
unknown

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comp(3597..3740)
DNA (144bp) protein (48aa)

This feature has no annotations

04302015_12_scaffold_656_8
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3740..4690)
DNA (951bp) protein (317aa)
homoserine kinase (EC:2.7.1.39); K02204 homoserine kinase type II [EC:2.7.1.39] rbh
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00301, ECO:0000256|SAAS:SAAS00085804}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00301};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00301};; EC=2.7.1.39 {ECO:0000256|
hypothetical protein n=1 Tax=Thiomicrospira halophila RepID=UPI000371B811 rbh
04302015_12_scaffold_656_9
Leptothrix ochracea, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4802..5482
DNA (681bp) protein (227aa)
Putative DNA alkylation repair enzyme n=1 Tax=Leptothrix ochracea L12 RepID=I4Z632_9BURK
Putative DNA alkylation repair enzyme {ECO:0000313|EMBL:EIM31674.1}; TaxID=735332 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix ochracea L12.
DNA alkylation repair enzyme
04302015_12_scaffold_656_10
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5488..6834)
DNA (1347bp) protein (449aa)
trmE; tRNA modification GTPase TrmE; K03650 tRNA modification GTPase [EC:3.6.-.-]
hypothetical protein n=1 Tax=Thiomicrospira halophila RepID=UPI00036635B3 rbh
Tax=CG_Thiomicrospira_01
04302015_12_scaffold_656_11
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6949..8625)
DNA (1677bp) protein (559aa)
Membrane protein insertase YidC n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31DI8_THICR rbh
60 kDa inner membrane insertion protein; K03217 preprotein translocase subunit YidC
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01810, ECO:0000256|SAAS:SAAS00003942}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_018
04302015_12_scaffold_656_12
Acinetobacter towneri, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8622..9095)
DNA (474bp) protein (158aa)
rnpA; ribonuclease P; K03536 ribonuclease P protein component [EC:3.1.26.5]
Ribonuclease P protein component n=1 Tax=Acinetobacter towneri DSM 14962 = CIP 107472 RepID=N9CKF1_9GAMM
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rul
04302015_12_scaffold_656_13
Tolumonas auensis, Tolumonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9115..9252)
DNA (138bp) protein (46aa)
50S ribosomal protein L34 n=1 Tax=Tolumonas auensis (strain DSM 9187 / TA4) RepID=RL34_TOLAT
50S ribosomal protein L34; K02914 large subunit ribosomal protein L34
50S ribosomal protein L34 {ECO:0000255|HAMAP-Rule:MF_00391}; TaxID=595494 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Tolumonas.;" source="Tolumonas auensis
04302015_12_scaffold_656_14
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9501..10262
DNA (762bp) protein (254aa)
Putative uncharacterized protein n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L113_HALNC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACX96386.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacil
04302015_12_scaffold_656_15
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10521..11900
DNA (1380bp) protein (460aa)
chromosomal replication initiation protein n=1 Tax=Thiomicrospira arctica RepID=UPI00035E26B1 rbh
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Pisc
chromosome replication initiator DnaA; K02313 chromosomal replication initiator protein
04302015_12_scaffold_656_16
gamma proteobacterium HTCC5015, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11978..13096
DNA (1119bp) protein (373aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=391615 species="Bacter
DNA polymerase III subunit beta (EC:2.7.7.7); K02338 DNA polymerase III subunit beta [EC:2.7.7.7]
DNA polymerase III subunit beta n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JT31_9GAMM
04302015_12_scaffold_656_17
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13105..13674
DNA (570bp) protein (190aa)
DNA replication and repair protein RecF n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DA75_9GAMM
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Pisciricke
DNA replication and repair protein RecF; K03629 DNA replication and repair protein RecF
Displaying 17 items

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