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04302015_12_scaffold_42

Search features with annotation key words

Displaying items 1-30 of 87 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_12_scaffold_42_1
unknown

Not on your lists

3..797
DNA (795bp) protein (265aa)

This feature has no annotations

04302015_12_scaffold_42_2
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(952..1464)
DNA (513bp) protein (171aa)
Methyltransferase type 12 n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YED3_9SPHI
Methyltransferase type 12 {ECO:0000313|EMBL:EHQ27167.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilagin
type 12 methyltransferase
04302015_12_scaffold_42_trna_1
unknown

Not on your lists

comp(1672..1744)
DNA (73bp)
transferRNA
04302015_12_scaffold_42_3
Azotobacter chroococcum, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1868..2167
DNA (300bp) protein (100aa)
Type I restriction-modification system, specificity subunit S n=1 Tax=Pseudomonas pseudoalcaligenes KF707 RepID=L8MI39_PSEPS
Uncharacterized protein {ECO:0000313|EMBL:AJE22036.1}; TaxID=1328314 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter chroo
Fis family transcriptional regulator
04302015_12_scaffold_42_4
unknown

Not on your lists

2164..2613
DNA (450bp) protein (150aa)

This feature has no annotations

04302015_12_scaffold_42_5
Rhodopirellula maiorica, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(2749..5895)
DNA (3147bp) protein (1049aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745833 rbh
Protein containing Putative membrane-bound dehydrogenase {ECO:0000313|EMBL:EMI22565.1}; TaxID=1265738 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirel
heme-binding domain-containing protein
04302015_12_scaffold_42_6
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

6103..7320
DNA (1218bp) protein (406aa)
pknB; serine/threonine kinase Pkn10 (EC:2.7.1.-); K08884 serine/threonine protein kinase, bacterial [EC:2.7.11.1]
Serine/threonine protein kinase with PASTA sensor(S) n=1 Tax=Rhodopirellula sallentina SM41 RepID=M5UB94_9PLAN
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
04302015_12_scaffold_42_7
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(7323..8108)
DNA (786bp) protein (262aa)
oxidoreductase domain protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744D7C rbh
oxidoreductase domain-containing protein
Tax=GWC2_Rokubacteria_70_16_curated
04302015_12_scaffold_42_8
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(8093..8341)
DNA (249bp) protein (83aa)
oxidoreductase domain protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744D7C
oxidoreductase domain-containing protein
Tax=CSP1_5_NC10
04302015_12_scaffold_42_9
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

8388..8843
DNA (456bp) protein (152aa)
molybdenum cofactor biosysynthesis protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745968
Molybdenum cofactor biosysynthesis protein {ECO:0000313|EMBL:AKC83143.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.
MOSC domain-containing protein
04302015_12_scaffold_42_10
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8840..9421
DNA (582bp) protein (194aa)
molybdopterin-guanine dinucleotide biosynthesis protein A-like protein; K03752 molybdopterin-guanine dinucleotide biosynthesis protein A [EC:2.7.7.77]
Molybdenum cofactor guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316, ECO:0000256|SAAS:SAAS00049907}; Short=MoCo guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316};; EC=2.7.7.77 {ECO:0000256|HA
molybdopterin-guanine dinucleotide biosynthesis protein A n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745967
04302015_12_scaffold_42_11
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9441..9812)
DNA (372bp) protein (124aa)
hypothetical protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B76FC0
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
04302015_12_scaffold_42_12
Akkermansia sp. CAG:344, Akkermansia, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(9860..10585)
DNA (726bp) protein (242aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=1262691 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verr
hypothetical protein; K09761 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745527
04302015_12_scaffold_42_13
Mariniradius saccharolyticus, Mariniradius, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(10587..11876)
DNA (1290bp) protein (430aa)
peptidase M24; K01262 Xaa-Pro aminopeptidase [EC:3.4.11.9] rbh
X-Pro aminopeptidase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745C12 rbh
Xaa-Pro aminopeptidase {ECO:0000313|EMBL:EMS34665.1}; TaxID=1239962 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Mariniradius.;" source="Mariniradius saccharolyticus
04302015_12_scaffold_42_14
Pirellula staleyi, Pirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(11946..13067)
DNA (1122bp) protein (374aa)
probable serine protease n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017462D0
PDZ/DHR/GLGF domain-containing protein
PDZ/DHR/GLGF domain protein {ECO:0000313|EMBL:ADB18580.1}; Flags: Precursor;; TaxID=530564 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="
04302015_12_scaffold_42_15
Pirellula staleyi, Pirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(13069..14079)
DNA (1011bp) protein (337aa)
probable serine protease DO-like protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017462CF rbh
PDZ/DHR/GLGF domain-containing protein
PDZ/DHR/GLGF domain protein {ECO:0000313|EMBL:ADB18581.1}; Flags: Precursor;; TaxID=530564 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="
04302015_12_scaffold_42_16
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

14521..15531
DNA (1011bp) protein (337aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verruco
dihydrolipoamide dehydrogenase; K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4]
Dihydrolipoyl dehydrogenase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9X9V8_9BACT rbh
04302015_12_scaffold_42_17
unknown

Not on your lists

15528..16451
DNA (924bp) protein (308aa)

This feature has no annotations

04302015_12_scaffold_42_18
Pirellula staleyi, Pirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

16876..17841
DNA (966bp) protein (322aa)
Amidohydrolase 2 n=1 Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2R0G3_PIRSD
amidohydrolase 2; K07046
Amidohydrolase 2 {ECO:0000313|EMBL:ADB14831.1}; Flags: Precursor;; TaxID=530564 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula s
04302015_12_scaffold_42_19
RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17850..18986)
DNA (1137bp) protein (379aa)
ABC-type multidrug transport system, permease component n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4CA48_DESTA rbh
ABC-type multidrug transport system, permease component rbh
Tax=RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated
04302015_12_scaffold_42_20
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18983..19912)
DNA (930bp) protein (310aa)
ABC-type multidrug transport system, ATPase component n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0LF58_9BACT rbh
ABC-type multidrug transport system, ATPase component rbh
Tax=GWC2_Geobacteraceae_53_11_curated
04302015_12_scaffold_42_21
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(19912..20859)
DNA (948bp) protein (316aa)
Multidrug resistance efflux pump n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4CA50_DESTA rbh
multidrug resistance efflux pump rbh
Tax=RBG_16_Nitrospirae_43_8_curated
04302015_12_scaffold_42_22
Desulfomonile tiedjei, Desulfomonile, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20856..21488)
DNA (633bp) protein (211aa)
Transcriptional regulator n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4CA51_DESTA
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AFM26442.1}; Flags: Precursor;; TaxID=706587 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Desulfomonile.;" so
04302015_12_scaffold_42_23
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(21576..24155)
DNA (2580bp) protein (860aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746B1D rbh
Membrane-bound dehydrogenase domain protein {ECO:0000313|EMBL:EEF57129.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia sub
coagulation factor 5/8 type domain-containing protein rbh
04302015_12_scaffold_42_24
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

24245..27214
DNA (2970bp) protein (990aa)
Kelch motif protein n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LKP4_CHLTF rbh
Kelch motif protein rbh
Tax=RBG_13_OP8X_37_8_curated
04302015_12_scaffold_42_25
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

27211..28116
DNA (906bp) protein (302aa)
Uncharacterized protein {ECO:0000313|EMBL:AKC82832.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
04302015_12_scaffold_42_26
RBG_16_Actinobacteria_68_21_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(28219..28770)
DNA (552bp) protein (184aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744907
cAMP-binding protein
Tax=RBG_16_Actinobacteria_68_21_curated
04302015_12_scaffold_42_27
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28932..31091
DNA (2160bp) protein (720aa)
ATP-dependent RecD-like DNA helicase {ECO:0000256|HAMAP-Rule:MF_01488}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01488};; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderi
RecD/TraA-family helicase (EC:3.1.11.5)
ATPase AAA n=1 Tax=Verrucomicrobium spinosum RepID=UPI000174612B rbh
04302015_12_scaffold_42_28
Gimesia maris, Gimesia, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

31149..32510
DNA (1362bp) protein (454aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745BDA rbh
Uncharacterized protein {ECO:0000313|EMBL:EDL58342.1}; TaxID=344747 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
dehydrogenase rbh
04302015_12_scaffold_42_29
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

32622..33185
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745679
Uncharacterized protein {ECO:0000313|EMBL:EDY21411.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein; K07735 putative transcriptional regulator
Displaying items 1-30 of 87 in total

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