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04302015_12_scaffold_642

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Displaying items 1-30 of 32 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_12_scaffold_642_1

Not on your lists

287..688
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746A70
Uncharacterized protein {ECO:0000313|EMBL:AHZ46163.1}; TaxID=1497524 species="Bacteria; environmental samples.;" source="uncultured bacterium 12-5D.;"
fimbrial protein
04302015_12_scaffold_642_2
unknown

Not on your lists

809..1294
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746A6F
04302015_12_scaffold_642_3
unknown

Not on your lists

1318..1722
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746A6E
04302015_12_scaffold_642_4
unknown

Not on your lists

1733..2266
DNA (534bp) protein (178aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746A6D
04302015_12_scaffold_642_5
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

2286..4460
DNA (2175bp) protein (725aa)
general secretory pathway protein E n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746A6C rbh
type II secretion system protein E; K02652 type IV pilus assembly protein PilB
Tax=GWC2_Rokubacteria_70_16_curated
04302015_12_scaffold_642_6
CG_Desulfarul_01, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4496..4975
DNA (480bp) protein (160aa)
integral membrane sensor hybrid histidine kinase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746A6B
histidine kinase
Tax=CG_Desulfarul_01
04302015_12_scaffold_642_7
Desulfocapsa sulfexigens, Desulfocapsa, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4972..6411
DNA (1440bp) protein (480aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; Flags: Precursor;; TaxID=1167006 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacteral
two-component hybrid sensor and regulator n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746A6A rbh
signal transduction histidine kinase
04302015_12_scaffold_642_8
Coleofasciculus chthonoplastes, Coleofasciculus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

6416..7684
DNA (1269bp) protein (423aa)
two-component hybrid sensor and regulator n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746A6A
PAS fold family {ECO:0000313|EMBL:EDX77647.1}; TaxID=118168 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Coleofasciculus.;" source="Coleofasciculus chthonoplastes PCC 7420
multi-sensor hybrid histidine kinase
04302015_12_scaffold_642_9
unknown

Not on your lists

comp(7702..8520)
DNA (819bp) protein (273aa)

This feature has no annotations

04302015_12_scaffold_642_10
unknown

Not on your lists

comp(8662..8775)
DNA (114bp) protein (38aa)

This feature has no annotations

04302015_12_scaffold_642_11
Gimesia maris, Gimesia, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(8968..10257)
DNA (1290bp) protein (430aa)
serine/threonine protein kinase n=1 Tax=Verrucomicrobium spinosum RepID=UPI000174694B rbh
Uncharacterized protein {ECO:0000313|EMBL:EDL61711.1}; TaxID=344747 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
Pyrrolo-quinoline quinone rbh
04302015_12_scaffold_642_12
unknown

Not on your lists

10394..10819
DNA (426bp) protein (142aa)

This feature has no annotations

04302015_12_scaffold_642_13
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(11004..13061)
DNA (2058bp) protein (686aa)
carbon starvation protein CstA n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745E18 rbh
carbon starvation protein CstA; K06200 carbon starvation protein rbh
Carbon starvation protein CstA {ECO:0000313|EMBL:ACB74684.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246
04302015_12_scaffold_642_14
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(13190..14125)
DNA (936bp) protein (312aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001744BA0 rbh
Uncharacterized protein {ECO:0000313|EMBL:EDY17720.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein; K09992 hypothetical protein rbh
04302015_12_scaffold_642_15
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

14206..14730
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745313
Uncharacterized protein {ECO:0000313|EMBL:EDY17058.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
04302015_12_scaffold_642_16
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

14727..15197
DNA (471bp) protein (157aa)
NUDIX hydrolase; K08311 putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
hydrolase, NUDIX family, NudH subfamily protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745083
NUDIX hydrolase {ECO:0000313|EMBL:EDY16840.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
04302015_12_scaffold_642_17
unknown

Not on your lists

comp(15204..15611)
DNA (408bp) protein (136aa)

This feature has no annotations

04302015_12_scaffold_642_18
Akkermansia sp. CAG:344, Akkermansia, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


comp(15718..16833)
DNA (1116bp) protein (372aa)
recA protein (EC:3.6.3.8); K03553 recombination protein RecA rbh
recombinase RecA n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745C24 rbh
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1262691 species="Bacteria; Verrucom
04302015_12_scaffold_642_19
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(16968..17963)
DNA (996bp) protein (332aa)
type II secretion system protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745C25
Type II secretion system protein {ECO:0000313|EMBL:EDY18649.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
general secretion pathway protein F; K02455 general secretion pathway protein F
04302015_12_scaffold_642_20
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

18098..19174
DNA (1077bp) protein (359aa)
riboflavin biosynthesis protein RibD; K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
riboflavin biosynthesis protein RibD n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745C26 rbh
Riboflavin biosynthesis protein RibD {ECO:0000313|EMBL:EDY18650.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
04302015_12_scaffold_642_21
RIFOXYA2_FULL_OD1_Falkowbacteria_47_19_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

19320..20702
DNA (1383bp) protein (461aa)
ATP-NAD kinase-like protein (EC:2.7.1.23); K00858 NAD+ kinase [EC:2.7.1.23]
inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746B17 rbh
Tax=RIFOXYA2_FULL_OD1_Falkowbacteria_47_19_curated
04302015_12_scaffold_642_22
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

20699..21556
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017450B8 rbh
Uncharacterized protein {ECO:0000313|EMBL:CCH51858.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
hypothetical protein
04302015_12_scaffold_642_23
unknown

Not on your lists

21730..22194
DNA (465bp) protein (155aa)

This feature has no annotations

04302015_12_scaffold_642_24
Pelobacter carbinolicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22320..23156
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A6E1_PELCD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA88066.1}; TaxID=338963 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter carbin
04302015_12_scaffold_642_25
unknown

Not on your lists

23470..23784
DNA (315bp) protein (105aa)

This feature has no annotations

04302015_12_scaffold_642_26
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

24630..25418
DNA (789bp) protein (263aa)
MazG family protein; K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19]
nucleoside triphosphate pyrophosphohydrolase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745149 rbh
MazG family protein {ECO:0000313|EMBL:EDY16358.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
04302015_12_scaffold_642_27
unknown

Not on your lists

25449..25700
DNA (252bp) protein (84aa)

This feature has no annotations

04302015_12_scaffold_642_28
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

25697..26092
DNA (396bp) protein (132aa)
ribonuclease n=1 Tax=Saccharomonospora saliphila RepID=UPI00036BF4C4
Conserved protein of unknown function with PIN domain, possible toxin
Tax=GWF2_Verrucomicrobia_62_7_curated
04302015_12_scaffold_642_29
Pseudomonas batumici, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26097..28826
DNA (2730bp) protein (910aa)
probable helicase n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017453E0 rbh
Superfamily II DNA/RNA helicase {ECO:0000313|EMBL:KIH85861.1}; TaxID=226910 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomona
SNF2-like
04302015_12_scaffold_642_30
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28944..29600
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017458A8
Methanol oxidation protein {ECO:0000313|EMBL:KFE70448.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="H
hypothetical protein
Displaying items 1-30 of 32 in total

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