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04302015_13_scaffold_244

Search features with annotation key words

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_13_scaffold_244_1
Thiolapillus brandeum, Thiolapillus, Gammaproteobacteria, Proteobacteria, Bacteria

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610..1707
DNA (1098bp) protein (366aa)
transposase n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262B74C rbh
Thiolapillus brandeum plasmid pTBH10 DNA, complete genome {ECO:0000313|EMBL:BAO45764.1}; TaxID=1076588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiolapillus.;" source="Thiolapillus bran
ISGsu2, transposase
04302015_13_scaffold_244_2
Acetobacter tropicalis, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1873..2130)
DNA (258bp) protein (86aa)
Probable plasmid stable inheritance protein I n=1 Tax=Acetobacter tropicalis NBRC 101654 RepID=F7VID6_9PROT
Probable plasmid stable inheritance protein I {ECO:0000313|EMBL:GAA10131.1}; TaxID=749388 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" sou
transcriptional regulator/antitoxin, MazE
04302015_13_scaffold_244_3
Dechloromonas aromatica, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2214..2459)
DNA (246bp) protein (82aa)
Helix-turn-helix motif protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47DQ0_DECAR rbh
helix-hairpin-helix DNA-binding motif-containing protein
Helix-turn-helix motif protein {ECO:0000313|EMBL:AAZ47031.1}; TaxID=159087 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas.;" source="Dechloromonas
04302015_13_scaffold_244_4
unknown

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2541..2993
DNA (453bp) protein (151aa)

This feature has no annotations

04302015_13_scaffold_244_5
unknown

Not on your lists

3352..3687
DNA (336bp) protein (112aa)

This feature has no annotations

04302015_13_scaffold_244_6
unknown

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comp(3980..4150)
DNA (171bp) protein (57aa)

This feature has no annotations

04302015_13_scaffold_244_7

Not on your lists

comp(4280..4471)
DNA (192bp) protein (64aa)
XRE family transcriptional regulator n=1 Tax=Acidithiobacillus thiooxidans RepID=UPI00026250C9 rbh
Transcriptional regulator, XRE family {ECO:0000313|EMBL:CBI06572.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
04302015_13_scaffold_244_8
Nitrosomonas sp. AL212, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4720..6009)
DNA (1290bp) protein (430aa)
ISRSO9-transposase protein n=1 Tax=Nitrosomonas sp. AL212 RepID=F0TDB2_9PROT rbh
ISRSO9-transposase protein
ISRSO9-transposase protein {ECO:0000313|EMBL:ADZ28102.1}; TaxID=153948 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas
04302015_13_scaffold_244_9
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6625..8373
DNA (1749bp) protein (583aa)
ATP-dependent endonuclease n=1 Tax=Klebsiella oxytoca RepID=UPI0002E5E12D rbh
AAA ATPase domain protein {ECO:0000313|EMBL:AIO36739.1}; TaxID=95486 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia comple
hypothetical protein
04302015_13_scaffold_244_10
Halomonas sp. A3H3, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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8370..10109
DNA (1740bp) protein (580aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1346287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Hal
hypothetical protein n=1 Tax=Klebsiella oxytoca RepID=UPI0003115B00 rbh
ATP-dependent DNA helicase
04302015_13_scaffold_244_11
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10439..10861
DNA (423bp) protein (141aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KXZ8_HALNC
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ACX95321.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" sourc
04302015_13_scaffold_244_12
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10861..12306
DNA (1446bp) protein (482aa)
phospholipase D/transphosphatidylase; K06131 cardiolipin synthase [EC:2.7.8.-]
Cardiolipin synthase A {ECO:0000256|SAAS:SAAS00016767}; EC=2.7.8.- {ECO:0000256|SAAS:SAAS00017006};; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillac
Phospholipase D/Transphosphatidylase n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KXZ7_HALNC
04302015_13_scaffold_244_13
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12681..13406)
DNA (726bp) protein (242aa)
Sel1 domain protein repeat-containing protein n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KXZ6_HALNC
Sel1 domain-containing protein repeat-containing protein; K07126
Sel1 domain protein repeat-containing protein {ECO:0000313|EMBL:ACX95319.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;"
04302015_13_scaffold_244_14
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13712..15472
DNA (1761bp) protein (587aa)
DNA primase; K02316 DNA primase [EC:2.7.7.-]
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=555778 species="Bacteria; Proteobacter
DNA primase n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KXZ5_HALNC
04302015_13_scaffold_244_15
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15604..17379
DNA (1776bp) protein (592aa)
RNA polymerase sigma factor RpoD n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KXZ4_HALNC rbh
RNA polymerase sigma-70 subunit RpoD; K03086 RNA polymerase primary sigma factor
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halot
04302015_13_scaffold_244_trna_1
unknown

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17422..17495
DNA (74bp)
transferRNA
04302015_13_scaffold_244_16
R_Curvibacter_63_18, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17942..18577
DNA (636bp) protein (212aa)
Transglutaminase domain-containing protein n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KR04_9BURK rbh
transglutaminase domain-containing protein
Tax=RIFCSPHIGHO2_12_FULL_Curvibacter_63_18_curated
04302015_13_scaffold_244_17
unknown

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comp(18655..19245)
DNA (591bp) protein (197aa)

This feature has no annotations

04302015_13_scaffold_244_18
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

19600..20616
DNA (1017bp) protein (339aa)
hypothetical protein n=1 Tax=Bordetella sp. FB-8 RepID=UPI00035F309E rbh
efflux transporter, RND family, MFP subunit
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ACO34117.1}; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium
04302015_13_scaffold_244_19
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20619..20813
DNA (195bp) protein (65aa)
AcrB/AcrD/AcrF family protein n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F8T1_ACIC5
AcrB/AcrD/AcrF family protein {ECO:0000313|EMBL:AJZ56259.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia
AcrB/AcrD/AcrF family protein
Displaying 20 items

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