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04302015_13_scaffold_15

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Displaying items 1-30 of 69 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_13_scaffold_15_1
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..114
DNA (114bp) protein (38aa)
Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818}; Short=GSA {ECO:0000256|HAMAP-Rule:MF_00375};; EC=5.4.3.8 {ECO:0000256|HAMAP-Rule:MF_00375, EC
hemL; Glutamate-1-semialdehyde 2,1-aminomutase (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT) (EC:5.4.3.8)
Glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLW4_THIA3
04302015_13_scaffold_15_2
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(122..838)
DNA (717bp) protein (239aa)
Monofunctional biosynthetic peptidoglycan transglycosylase {ECO:0000256|HAMAP-Rule:MF_00766, ECO:0000256|SAAS:SAAS00055690}; Short=Monofunctional TGase {ECO:0000256|HAMAP-Rule:MF_00766};; EC=2.4.2.- {
putative monofunctional biosynthetic peptidoglycan transglycosylase MtgA (EC:2.4.2.-) rbh
Monofunctional biosynthetic peptidoglycan transglycosylase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLW3_THIA3 rbh
04302015_13_scaffold_15_3
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(835..1701)
DNA (867bp) protein (289aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000
aroE; shikimate dehydrogenase (EC:1.1.1.25) rbh
Shikimate dehydrogenase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLW2_THIA3 rbh
04302015_13_scaffold_15_4
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1716..2600)
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLW1_THIA3 rbh
conserved hypothetical protein; putative exported protein; putative TonB protein
Uncharacterized protein {ECO:0000313|EMBL:CAZ89539.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22
04302015_13_scaffold_15_5
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2648..4720)
DNA (2073bp) protein (691aa)
Putative exoribonuclease II {ECO:0000313|EMBL:CDW94250.1}; EC=3.1.13.1 {ECO:0000313|EMBL:CDW94250.1};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;"
putative exoribonuclease II (EC:3.1.13.1)
Putative exoribonuclease II n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLW0_THIA3 rbh
04302015_13_scaffold_15_6
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4717..5457)
DNA (741bp) protein (247aa)
3-oxoacyl-(Acyl-carrier-protein) reductase FabG {ECO:0000313|EMBL:CDW94253.1}; EC=1.1.1.100 {ECO:0000313|EMBL:CDW94253.1};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkhold
3-oxoacyl-(acyl-carrier-protein) reductase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5H9_THIK1 rbh
04302015_13_scaffold_15_7
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5470..6102)
DNA (633bp) protein (211aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5H8_THIK1 rbh
Uncharacterized protein {ECO:0000313|EMBL:CDW94254.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
hypothetical protein; K07000 rbh
04302015_13_scaffold_15_8
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6169..6663)
DNA (495bp) protein (165aa)
CBS domain containing protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5H7_THIK1 rbh
CBS domain containing protein {ECO:0000313|EMBL:CDW94255.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
hypothetical protein
04302015_13_scaffold_15_9
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6777..7550
DNA (774bp) protein (258aa)
Alpha/beta hydrolase fold protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5H6_THIK1 rbh
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:CDW94256.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
alpha/beta hydrolase fold protein
04302015_13_scaffold_15_10
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7466..7843)
DNA (378bp) protein (126aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5H5_THIK1 rbh
Uncharacterized protein {ECO:0000313|EMBL:CDW94257.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
hypothetical protein
04302015_13_scaffold_15_11
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7996..9009
DNA (1014bp) protein (338aa)
Putative transcription regulator protein, LysR family n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLV4_THIA3 rbh
Putative transcription regulator protein, LysR family {ECO:0000313|EMBL:CDW94258.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas
putative transcription regulator protein, LysR family rbh
04302015_13_scaffold_15_12
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9037..9969)
DNA (933bp) protein (311aa)
Putative Clavaminate synthase-like n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLV3_THIA3 rbh
Putative Clavaminate synthase-like {ECO:0000313|EMBL:CDW94260.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
putative Clavaminate synthase-like
04302015_13_scaffold_15_13
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10074..12275)
DNA (2202bp) protein (734aa)
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5H2_THIK1 rbh
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC {ECO:0000256|HAMAP-Rule:MF_01102, ECO:0000256|SAAS:SAAS00084295}; Short=tRNA mnm(5)s(2)U biosynthesis bifunctional protein
tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC rbh
04302015_13_scaffold_15_14
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12272..12892)
DNA (621bp) protein (207aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
Putative 5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLV1_THIA3 rbh
putative 5-formyltetrahydrofolate cyclo-ligase rbh
04302015_13_scaffold_15_15
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12915..15014
DNA (2100bp) protein (700aa)
Lytic transglycosylase catalytic; K08309 soluble lytic murein transglycosylase [EC:3.2.1.-]
Lytic transglycosylase catalytic n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5H0_THIK1 rbh
Lytic transglycosylase catalytic {ECO:0000313|EMBL:CDW94265.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
04302015_13_scaffold_15_16
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15158..16150
DNA (993bp) protein (331aa)
NAD-dependent epimerase/dehydratase; K00329 NADH dehydrogenase [EC:1.6.5.3]; K00356 NADH dehydrogenase [EC:1.6.99.3] rbh
NAD-dependent epimerase/dehydratase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5G9_THIK1 rbh
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ADG31862.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain
04302015_13_scaffold_15_17
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16268..17296
DNA (1029bp) protein (343aa)
putative glutathione S-transferase with Thioredoxin domain (EC:2.5.1.18) rbh
Putative glutathione S-transferase with Thioredoxin domain {ECO:0000313|EMBL:CAZ89526.1}; EC=2.5.1.18 {ECO:0000313|EMBL:CAZ89526.1};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria
Putative glutathione S-transferase with Thioredoxin domain n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLU8_THIA3 rbh
04302015_13_scaffold_15_18
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17351..19360
DNA (2010bp) protein (670aa)
ATP-dependent DNA helicase Rep {ECO:0000256|HAMAP-Rule:MF_01920}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01920, ECO:0000256|SAAS:SAAS00145970};; TaxID=75379 species="Bacteria; Proteobacteria; Betaprot
UvrD/REP helicase; K03656 ATP-dependent DNA helicase Rep [EC:3.6.4.12] rbh
UvrD/REP helicase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5G7_THIK1 rbh
04302015_13_scaffold_15_19
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19470..21140
DNA (1671bp) protein (557aa)
Acyl-CoA synthetase (Long-chain-fatty-acid--CoA ligase) {ECO:0000313|EMBL:CDW94272.1}; EC=6.2.1.3 {ECO:0000313|EMBL:CDW94272.1};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Bu
AMP-dependent synthetase and ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3] rbh
AMP-dependent synthetase and ligase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5G6_THIK1 rbh
04302015_13_scaffold_15_20
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21317..23839)
DNA (2523bp) protein (841aa)
Putative Adenylyl and guanylyl cyclase/Phospholipase A2 with PAS, EAL and GGDEF domains {ECO:0000313|EMBL:CDW94274.1}; EC=2.7.7.65 {ECO:0000313|EMBL:CDW94274.1};; TaxID=554131 species="Bacteria; Prote
putative Adenylyl and guanylyl cyclase/Phospholipase A2; with PAS, EAL and GGDEF domains (EC:2.7.7.65) rbh
Putative Adenylyl and guanylyl cyclase/Phospholipase A2 with PAS, EAL and GGDEF domains n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLU5_THIA3 rbh
04302015_13_scaffold_15_21
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24055..25323
DNA (1269bp) protein (423aa)
Multifunctional CCA protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLU4_THIA3 rbh
Multifunctional CCA protein {ECO:0000256|HAMAP-Rule:MF_01261}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
cca; Multifunctional CCA protein [Includes: CCA-adding enzyme (tRNA nucleotidyltransferase) (tRNA adenylyl-/cytidylyl-transferase) (tRNA CCA-pyrophosphorylase) (tRNA-NT); 2'-nucleotidase; 2',3'-cyclic rbh
04302015_13_scaffold_15_22
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25329..27692
DNA (2364bp) protein (788aa)
Putative glycosyltransferase with thioredoxin domain n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLU3_THIA3 rbh
Uncharacterized protein {ECO:0000313|EMBL:CDW94278.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
putative glycosyltransferase with thioredoxin domain rbh
04302015_13_scaffold_15_23
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27748..28206)
DNA (459bp) protein (153aa)
Putative Signal transduction histidine kinase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLU2_THIA3 rbh
putative Signal transduction histidine kinase
Putative Signal transduction histidine kinase {ECO:0000313|EMBL:CAZ89520.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenit
04302015_13_scaffold_15_24
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28327..29358
DNA (1032bp) protein (344aa)
Isocitrate dehydrogenase (NAD) catalytic subunit 5, mitochondrial {ECO:0000313|EMBL:CDW94282.1}; EC=1.1.1.41 {ECO:0000313|EMBL:CDW94282.1};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteob
idh2; Isocitrate dehydrogenase [NAD] subunit 2 (Isocitric dehydrogenase) (NAD(+)-specific ICDH) (EC:1.1.1.41) rbh
Isocitrate dehydrogenase [NAD] subunit 2 (Isocitric dehydrogenase) (NAD(+)-specific ICDH) n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLU1_THIA3 rbh
04302015_13_scaffold_15_25
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29392..29832)
DNA (441bp) protein (147aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5F9_THIK1 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG31852.1}; Flags: Precursor;; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia
04302015_13_scaffold_15_26
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29848..31125)
DNA (1278bp) protein (426aa)
Oxidoreductase molybdopterin binding protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5F8_THIK1 rbh
Oxidoreductase molybdopterin binding protein {ECO:0000313|EMBL:CDW94285.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.
oxidoreductase molybdopterin binding protein rbh
04302015_13_scaffold_15_27
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31269..32036)
DNA (768bp) protein (256aa)
putative reductase / dehydrogenase (EC:1.1.1.100) rbh
Putative reductase / dehydrogenase {ECO:0000313|EMBL:CAZ89516.1}; EC=1.1.1.100 {ECO:0000313|EMBL:CAZ89516.1};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thio
Putative reductase / dehydrogenase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLT8_THIA3 rbh
04302015_13_scaffold_15_28
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32036..32614)
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLT7_THIA3 rbh
conserved hypothetical protein; putative exported protein
Uncharacterized protein {ECO:0000313|EMBL:CDW94287.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
04302015_13_scaffold_15_29
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32630..33970)
DNA (1341bp) protein (447aa)
Major facilitator superfamily MFS_1 n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5F5_THIK1 rbh
major facilitator superfamily protein rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ADG31848.1}; Flags: Precursor;; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas
04302015_13_scaffold_15_30
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33967..34578)
DNA (612bp) protein (204aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5F4_THIK1 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG31847.1}; Flags: Precursor;; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia
Displaying items 1-30 of 69 in total

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