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04302015_13_scaffold_79

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Displaying items 1-30 of 31 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_13_scaffold_79_1
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3..161
DNA (159bp) protein (53aa)
dTDP-4-dehydrorhamnose reductase subunit, NAD(P)-binding, of dTDP-L-rhamnose synthase {ECO:0000313|EMBL:CDW94212.1}; EC=1.1.1.133 {ECO:0000313|EMBL:CDW94212.1};; TaxID=554131 species="Bacteria; Proteo
dTDP-4-dehydrorhamnose reductase (EC:1.1.1.133); K00067 dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
dTDP-4-dehydrorhamnose reductase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5L5_THIK1
04302015_13_scaffold_79_2
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

170..1057
DNA (888bp) protein (296aa)
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderi
glucose-1-phosphate thymidylyltransferase; K00973 glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] rbh
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5L4_THIK1 rbh
04302015_13_scaffold_79_3
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1054..1617
DNA (564bp) protein (188aa)
dTDP-4-deoxyrhamnose-3,5-epimerase {ECO:0000313|EMBL:CDW94214.1}; EC=5.1.3.13 {ECO:0000313|EMBL:CDW94214.1};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiom
rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase (dTDP-4-keto-6-deoxyglucose 3,5-epimerase) (dTDP-L-rhamnose synthetase) (EC:5.1.3.13) rbh
dTDP-4-dehydrorhamnose 3,5-epimerase (DTDP-4-keto-6-deoxyglucose 3,5-epimerase) (DTDP-L-rhamnose synthetase) n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLZ3_THIA3 rbh
04302015_13_scaffold_79_4
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1700..2635
DNA (936bp) protein (312aa)
Putative Permease of the drug/metabolite transporter (DMT) superfamily n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLZ2_THIA3 rbh
putative Permease of the drug/metabolite transporter (DMT) superfamily
Putative Permease of the drug/metabolite transporter (DMT) superfamily {ECO:0000313|EMBL:CAZ89570.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;"
04302015_13_scaffold_79_5
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2762..5335
DNA (2574bp) protein (858aa)
Uncharacterized protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLZ1_THIA3 rbh
Uncharacterized protein {ECO:0000313|EMBL:CAZ89569.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22
Hypothetical protein putative EAL and GGDEF domains
04302015_13_scaffold_79_6
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5462..6613)
DNA (1152bp) protein (384aa)
Putative Lytic murein transglycosylase B n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLZ0_THIA3 rbh
putative Lytic murein transglycosylase B rbh
Putative Lytic murein transglycosylase B {ECO:0000313|EMBL:CAZ89568.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxyda
04302015_13_scaffold_79_7
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6787..8802
DNA (2016bp) protein (672aa)
Uncharacterized protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLY9_THIA3 rbh
Uncharacterized protein {ECO:0000313|EMBL:CAZ89567.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22
conserved hypothetical protein; putative exported protein
04302015_13_scaffold_79_8
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8949..9437
DNA (489bp) protein (163aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5K8_THIK1 rbh
Uncharacterized protein {ECO:0000313|EMBL:CDW94220.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
hypothetical protein rbh
04302015_13_scaffold_79_9
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9543..10085
DNA (543bp) protein (181aa)
Sterol-binding domain protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5K7_THIK1 rbh
Sterol-binding domain-containing protein rbh
Sterol-binding domain protein {ECO:0000313|EMBL:ADG31900.1}; Flags: Precursor;; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas inter
04302015_13_scaffold_79_10
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10163..10639)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLY6_THIA3 rbh
hypothetical protein; putative exported protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CAZ89564.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22
04302015_13_scaffold_79_11
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10680..11849)
DNA (1170bp) protein (390aa)
Putative porin n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLY5_THIA3 rbh
Putative porin {ECO:0000313|EMBL:CDW94223.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
putative porin rbh
04302015_13_scaffold_79_12
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12324..13829)
DNA (1506bp) protein (502aa)
Ribonuclease G {ECO:0000313|EMBL:CDW94224.1}; EC=3.1.4.- {ECO:0000313|EMBL:CDW94224.1};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiom
cafA; Ribonuclease G (RNase G) (Cytoplasmic axial filament protein) (EC:3.1.4.-) rbh
Ribonuclease G (RNase G) (Cytoplasmic axial filament protein) n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLY3_THIA3 rbh
04302015_13_scaffold_79_13
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13826..14503)
DNA (678bp) protein (226aa)
Maf-like protein THI_2954 n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLY2_THIA3 rbh
Maf-like protein yhdE {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
putative Maf protein rbh
04302015_13_scaffold_79_14

Not on your lists

14648..15991
DNA (1344bp) protein (448aa)
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (Murein peptide ligase) {ECO:0000313|EMBL:CBH95663.1}; EC=6.3.2.- {ECO:0000313|EMBL:CBH95663.1};; TaxID=410659 species="uncla
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase; K02558 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.-]
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (Murein peptide ligase) n=1 Tax=mine drainage metagenome RepID=E6PL62_9ZZZZ
04302015_13_scaffold_79_15
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16002..17096
DNA (1095bp) protein (365aa)
aroC; Chorismate synthase(5-enolpyruvylshikimate-3-phosphate phospholyase) (EC:4.2.3.5) rbh
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU0
Chorismate synthase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLY0_THIA3 rbh
04302015_13_scaffold_79_16
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17364..18191)
DNA (828bp) protein (276aa)
Putative transcriptional regulator, LuxR family n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLX9_THIA3 rbh
Putative transcriptional regulator, LuxR family {ECO:0000313|EMBL:CDW94228.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. C
putative transcriptional regulator, LuxR family rbh
04302015_13_scaffold_79_trna_1
unknown

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comp(18223..18294)
DNA (72bp)
transferRNA
04302015_13_scaffold_79_17
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18325..19167)
DNA (843bp) protein (281aa)
Putative 1-acylglycerol-3-phosphate O-acyltransferase {ECO:0000313|EMBL:CDW94229.1}; EC=2.3.1.51 {ECO:0000313|EMBL:CDW94229.1};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Bur
putative 1-acylglycerol-3-phosphate O-acyltransferase (EC:2.3.1.51) rbh
Putative 1-acylglycerol-3-phosphate O-acyltransferase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLX8_THIA3 rbh
04302015_13_scaffold_79_18
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19164..20468)
DNA (1305bp) protein (435aa)
amidohydrolase; K01465 dihydroorotase [EC:3.5.2.3] rbh
Amidohydrolase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5J7_THIK1 rbh
Dihydroorotase-like protein {ECO:0000313|EMBL:CDW94230.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
04302015_13_scaffold_79_19
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20465..21433)
DNA (969bp) protein (323aa)
aspartate carbamoyltransferase; K00609 aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=75379 species="Bact
Aspartate carbamoyltransferase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5J6_THIK1 rbh
04302015_13_scaffold_79_20
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21449..21994)
DNA (546bp) protein (182aa)
Bifunctional protein PyrR {ECO:0000313|EMBL:CDW94232.1}; EC=2.4.2.9 {ECO:0000313|EMBL:CDW94232.1};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" so
putative Pyrimidine operon attenuation protein PyrR/uracil phosphoribosyltransferase (EC:2.4.2.9)
Putative Pyrimidine operon attenuation protein PyrR/uracil phosphoribosyltransferase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLX5_THIA3 rbh
04302015_13_scaffold_79_21
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21997..22410)
DNA (414bp) protein (138aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=426114 specie
Putative Holliday junction resolvase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLX4_THIA3 rbh
putative holliday junction resolvase
04302015_13_scaffold_79_22
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22403..22975)
DNA (573bp) protein (191aa)
UPF0301 protein THI_2945 n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLX3_THIA3 rbh
Putative transcriptional regulator
UPF0301 protein THI_2945 {ECO:0000256|HAMAP-Rule:MF_00758}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain D
04302015_13_scaffold_79_23
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23023..24552
DNA (1530bp) protein (510aa)
Deoxyribodipyrimidine photo-lyase {ECO:0000313|EMBL:CDW94237.1}; EC=4.1.99.3 {ECO:0000313|EMBL:CDW94237.1};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomo
DNA photolyase FAD-binding protein; K01669 deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] rbh
DNA photolyase FAD-binding protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5J2_THIK1 rbh
04302015_13_scaffold_79_24
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24546..30512)
DNA (5967bp) protein (1989aa)
CheA signal transduction histidine kinase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5J1_THIK1 rbh
CheA signal transduction histidine kinase {ECO:0000313|EMBL:CDW94238.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
CheA signal transduction histidine kinase; K02487 type IV pili sensor histidine kinase and response regulator; K06596 chemosensory pili system protein ChpA (sensor histidine kinase/response regulator) rbh
04302015_13_scaffold_79_25
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30562..32772)
DNA (2211bp) protein (737aa)
Methyl-accepting chemotaxis sensory transducer n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5J0_THIK1 rbh
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:CDW94239.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB
methyl-accepting chemotaxis sensory transducer; K02660 twitching motility protein PilJ
04302015_13_scaffold_79_26
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32898..33422)
DNA (525bp) protein (175aa)
CheW protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5I9_THIK1 rbh
CheW protein {ECO:0000313|EMBL:CDW94240.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
CheW protein; K02659 twitching motility protein PilI
04302015_13_scaffold_79_27
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33472..33837)
DNA (366bp) protein (122aa)
Response regulator receiver protein n=2 Tax=Thiomonas RepID=D5X5I8_THIK1 rbh
response regulator receiver protein; K02658 twitching motility two-component system response regulator PilH
Protein pilH {ECO:0000313|EMBL:CAZ89546.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 1
04302015_13_scaffold_79_28
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33868..34278)
DNA (411bp) protein (137aa)
Response regulator receiver protein n=2 Tax=Thiomonas RepID=D5X5I7_THIK1 rbh
pilG; Protein pilG
Twitching motility protein {ECO:0000313|EMBL:CDW94242.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
04302015_13_scaffold_79_29
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34668..35594
DNA (927bp) protein (309aa)
putative phosphomethylpyrimidine kinase (EC:2.7.4.7) rbh
Putative phosphomethylpyrimidine kinase {ECO:0000313|EMBL:CAZ89543.1}; EC=2.7.4.7 {ECO:0000313|EMBL:CAZ89543.1};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; T
Putative phosphomethylpyrimidine kinase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLW5_THIA3 rbh
Displaying items 1-30 of 31 in total

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