ggKbase home page

04302015_13_scaffold_2

Search features with annotation key words

Displaying items 1-30 of 110 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_13_scaffold_2_1
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..66)
DNA (66bp) protein (22aa)
LysR substrate-binding protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TU78_ALIDB
LysR family transcriptional regulator
LysR substrate-binding protein; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
04302015_13_scaffold_2_2
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(268..1176)
DNA (909bp) protein (303aa)
LysR family transcriptional regulator rbh
LysR substrate-binding protein {ECO:0000313|EMBL:ADV00483.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphi
04302015_13_scaffold_2_3
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1301..1579
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TU77_ALIDB rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV00482.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus den
04302015_13_scaffold_2_4
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1775..3076)
DNA (1302bp) protein (434aa)
ATPase P n=1 Tax=Comamonas testosteroni RepID=UPI0003688D8C
ATPase P {ECO:0000313|EMBL:KGH12459.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testo
ATPase P rbh
04302015_13_scaffold_2_5
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3305..3589
DNA (285bp) protein (95aa)
UPI0003CDE33C related cluster n=1 Tax=unknown RepID=UPI0003CDE33C rbh
Nickel-resistant pritein NirB {ECO:0000313|EMBL:ESW75462.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobi
hypothetical protein; K07807 hypothetical protein NreA
04302015_13_scaffold_2_6
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3649..4974
DNA (1326bp) protein (442aa)
major facilitator transporter n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI000363318F rbh
NreB protein; K07785 MFS transporter, NRE family, putaive nickel resistance protein
Permease,MFS {ECO:0000313|EMBL:AGG70585.1}; TaxID=1286640 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinor
04302015_13_scaffold_2_7
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5016..6842
DNA (1827bp) protein (609aa)
heavy metal translocating P-type ATPase; K01534 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5]
Heavy metal translocating P-type ATPase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WK06_9BURK rbh
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:EHR70978.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_00
04302015_13_scaffold_2_8
unknown

Not on your lists

comp(6755..7117)
DNA (363bp) protein (121aa)

This feature has no annotations

04302015_13_scaffold_2_9
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7415..7996
DNA (582bp) protein (194aa)
RND family efflux transporter, MFP subunit n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WK10_9BURK
Cation efflux system protein CusB {ECO:0000313|EMBL:EWS56602.1}; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29.;"
membrane-fusion protein
04302015_13_scaffold_2_10
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8078..9028
DNA (951bp) protein (317aa)
Uncharacterized protein n=2 Tax=Pseudomonas aeruginosa RepID=N2D167_PSEAI rbh
integrase catalytic subunit rbh
Transposase {ECO:0000313|EMBL:EJL68479.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
04302015_13_scaffold_2_11
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9055..9588
DNA (534bp) protein (178aa)
RND family efflux transporter, MFP subunit n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WK10_9BURK
RND family efflux transporter, MFP subunit {ECO:0000313|EMBL:EHR70982.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderia
membrane-fusion protein
04302015_13_scaffold_2_12
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9590..12682
DNA (3093bp) protein (1031aa)
Heavy metal efflux pump, cobalt-zinc-cadmium n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WK09_9BURK rbh
heavy metal efflux pump, cobalt-zinc-cadmium
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
04302015_13_scaffold_2_13
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12675..12977
DNA (303bp) protein (101aa)
Putative uncharacterized protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WK08_9BURK rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EHR70980.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacter
Protein of unknown function (DUF3240)
04302015_13_scaffold_2_14
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12974..14215
DNA (1242bp) protein (414aa)
Outer membrane protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WK07_9BURK rbh
Type I secretion outer membrane protein, TolC family {ECO:0000313|EMBL:EWS56605.1}; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methyli
outer membrane protein
04302015_13_scaffold_2_15
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14409..15305
DNA (897bp) protein (299aa)
LysR substrate-binding protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TTI2_ALIDB rbh
LysR family transcriptional regulator rbh
LysR substrate-binding protein {ECO:0000313|EMBL:ADV00456.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphi
04302015_13_scaffold_2_16
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15868..16626
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TTI1_ALIDB rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADV00455.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus den
04302015_13_scaffold_2_17
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16752..16970
DNA (219bp) protein (73aa)
Uncharacterized protein n=5 Tax=Pseudomonas aeruginosa RepID=U8BTW2_PSEAI rbh
phage transcriptional regulator AlpA; K07733 prophage regulatory protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
04302015_13_scaffold_2_18
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17011..17889
DNA (879bp) protein (293aa)
Cobyrinic acid ac-diamide synthase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TTH9_ALIDB rbh
cobyrinic acid ac-diamide synthase
Cobyrinic acid ac-diamide synthase {ECO:0000313|EMBL:ADV00453.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycl
04302015_13_scaffold_2_19
Burkholderia sp. Ch1-1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17873..18139
DNA (267bp) protein (89aa)
cobyrinic acid a,c-diamide synthase n=1 Tax=Azoarcus toluclasticus RepID=UPI00036B068A rbh
Uncharacterized protein {ECO:0000313|EMBL:EIF29941.1}; TaxID=243261 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. C
hypothetical protein
04302015_13_scaffold_2_20
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18132..19811
DNA (1680bp) protein (560aa)
Uncharacterized protein n=1 Tax=Ralstonia pickettii (strain 12D) RepID=C6BDK5_RALP1 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS61940.1}; TaxID=428406 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii (
04302015_13_scaffold_2_21
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19825..20385
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Ralstonia pickettii (strain 12D) RepID=C6BDK6_RALP1 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACS61941.1}; TaxID=428406 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii (
04302015_13_scaffold_2_22
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20389..21639
DNA (1251bp) protein (417aa)
Uncharacterized protein n=1 Tax=Ralstonia pickettii (strain 12D) RepID=C6BDK7_RALP1 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACS61942.1}; TaxID=428406 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii (
04302015_13_scaffold_2_23
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21870..22643
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Ralstonia pickettii (strain 12D) RepID=C6BDK8_RALP1 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACS61943.1}; TaxID=428406 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii (
04302015_13_scaffold_2_24
Thauera aminoaromatica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22640..23191
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa PA45 RepID=N4VUU8_PSEAI rbh
Uncharacterized protein {ECO:0000313|EMBL:ENO88982.1}; TaxID=1234381 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera aminoaromatica S2.
hypothetical protein rbh
04302015_13_scaffold_2_25
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23188..23571
DNA (384bp) protein (128aa)
Single-stranded DNA-binding protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TTH2_ALIDB rbh
single-strand binding protein/primosomal replication protein n; K03111 single-strand DNA-binding protein
Single-stranded DNA-binding protein {ECO:0000256|PIRNR:PIRNR002070}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alic
04302015_13_scaffold_2_26
Alcaligenes sp. EGD-AK7, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23868..25886
DNA (2019bp) protein (673aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=1386079 species="Bacteria; Proteoba
DNA topoisomerase III (EC:5.99.1.2)
DNA topoisomerase n=1 Tax=Pseudomonas aeruginosa WC55 RepID=T5L084_PSEAI rbh
04302015_13_scaffold_2_27
Pectobacterium carotovorum, Pectobacterium, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25790..26467)
DNA (678bp) protein (226aa)
Uncharacterized protein {ECO:0000313|EMBL:KHS75955.1}; TaxID=180957 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pectobacterium.;" source="Pectobacter
04302015_13_scaffold_2_28
Pseudomonas sp. M1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26692..26943
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HYM2_PSEUO rbh
Uncharacterized protein {ECO:0000313|EMBL:ETM66022.1}; TaxID=95619 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (st
hypothetical protein
04302015_13_scaffold_2_29
Thauera aminoaromatica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26969..27361
DNA (393bp) protein (131aa)
Uncharacterized protein n=5 Tax=Proteobacteria RepID=N4VX77_PSEAI rbh
Uncharacterized protein {ECO:0000313|EMBL:ENO88986.1}; TaxID=1234381 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera aminoaromatica S2.
hypothetical protein
04302015_13_scaffold_2_30
Pandoraea apista, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27465..27929
DNA (465bp) protein (155aa)
Uncharacterized protein n=4 Tax=Proteobacteria RepID=N6Z315_9RHOO rbh
Uncharacterized protein {ECO:0000313|EMBL:AJE97683.1}; TaxID=93218 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea apista.;"
hypothetical protein
Displaying items 1-30 of 110 in total

View Taxonomy