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04302015_13_scaffold_29

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Displaying items 1-30 of 53 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_13_scaffold_29_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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2..1780
DNA (1779bp) protein (593aa)
iorB; isoquinoline 1-oxidoreductase subunit beta (EC:1.3.99.16); K07303 isoquinoline 1-oxidoreductase, beta subunit [EC:1.3.99.16]
hypothetical protein n=1 Tax=Thiomonas sp. FB-6 RepID=UPI0003668B22 rbh
Tax=RBG_16_RIF_WS3X_71_46_curated
04302015_13_scaffold_29_2
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1886..2995
DNA (1110bp) protein (370aa)
Putative uncharacterized protein n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KVP3_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EGI76109.1}; TaxID=887062 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis
hypothetical protein; K07402 xanthine dehydrogenase accessory factor rbh
04302015_13_scaffold_29_3

Not on your lists

comp(3036..3584)
DNA (549bp) protein (183aa)
hypothetical protein; K07141 molybdenum cofactor cytidylyltransferase [EC:2.7.7.76]
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6QRI0_9ZZZZ rbh
Uncharacterized protein {ECO:0000313|EMBL:CBI09852.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
04302015_13_scaffold_29_4

Not on your lists

3861..5525
DNA (1665bp) protein (555aa)
ABC transporter; K06020 sulfate-transporting ATPase [EC:3.6.3.25]
Putative ABC-type transport system with duplicated ATPase domains n=1 Tax=mine drainage metagenome RepID=E6PW36_9ZZZZ rbh
Putative ABC-type transport system with duplicated ATPase domains {ECO:0000313|EMBL:CBH99143.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drain
04302015_13_scaffold_29_5

Not on your lists

5573..5938
DNA (366bp) protein (122aa)
Putative thioredoxin protein n=1 Tax=mine drainage metagenome RepID=E6PKI9_9ZZZZ rbh
Putative thioredoxin protein {ECO:0000313|EMBL:CBH95440.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
putative thioredoxin protein
04302015_13_scaffold_29_6
endosymbiont of unidentified scaly snail isolate Monju, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5977..6261)
DNA (285bp) protein (95aa)
Acylphosphatase {ECO:0000313|EMBL:BAN69118.1}; EC=3.6.1.7 {ECO:0000313|EMBL:BAN69118.1};; TaxID=1248727 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="endosymbiont of unidentified s
acylphosphatase; K01512 acylphosphatase [EC:3.6.1.7]
hypothetical protein n=1 Tax=Thiomonas sp. FB-6 RepID=UPI000373F0BA rbh
04302015_13_scaffold_29_7

Not on your lists

comp(6248..7033)
DNA (786bp) protein (262aa)
Putative Alanine racemase n=1 Tax=mine drainage metagenome RepID=E6PW33_9ZZZZ rbh
Putative Alanine racemase {ECO:0000313|EMBL:CBH99140.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
putative Alanine racemase, yggS
04302015_13_scaffold_29_8

Not on your lists

7231..8277
DNA (1047bp) protein (349aa)
Twitching mobility protein n=1 Tax=mine drainage metagenome RepID=E6PW32_9ZZZZ rbh
Twitching mobility protein {ECO:0000313|EMBL:CBH99139.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
twitching motility protein; K02669 twitching motility protein PilT rbh
04302015_13_scaffold_29_9

Not on your lists

8360..8971
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PW31_9ZZZZ rbh
Uncharacterized protein {ECO:0000313|EMBL:CBH99138.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein; putative cAMP-binding domain
04302015_13_scaffold_29_10

Not on your lists

9029..10162
DNA (1134bp) protein (378aa)
Type IV twitching motiilty protein PilU n=1 Tax=mine drainage metagenome RepID=E6PW30_9ZZZZ rbh
Type IV twitching motiilty protein PilU {ECO:0000313|EMBL:CBH99137.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
pilU; twitching motility protein PilU; K02670 twitching motility protein PilU
04302015_13_scaffold_29_11

Not on your lists

10277..11407
DNA (1131bp) protein (377aa)
Putative ABC-type branched-chain amino acid transport systems, periplasmic component n=1 Tax=mine drainage metagenome RepID=E6PW29_9ZZZZ rbh
Putative ABC-type branched-chain amino acid transport systems, periplasmic component {ECO:0000313|EMBL:CBH99136.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;"
putative ABC-type branched-chain amino acid transport systems, periplasmic component
04302015_13_scaffold_29_12

Not on your lists

11439..11951
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PW28_9ZZZZ rbh
Uncharacterized protein {ECO:0000313|EMBL:CBH99135.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
04302015_13_scaffold_29_13

Not on your lists

comp(11968..13203)
DNA (1236bp) protein (412aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PW27_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBH99134.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
conserved hypothetical protein; putative fused SpmA/SpmB domain
04302015_13_scaffold_29_14

Not on your lists

comp(13843..16053)
DNA (2211bp) protein (737aa)
Cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD) {ECO:0000313|EMBL:CBH99130.1}; EC=3.6.1.- {ECO:0000313|EMBL:CBH99130.1};; TaxID=410659 species="unclassified sequences; metagenomes; eco
DEAD/DEAH box helicase; K05592 ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Cold-shock DEAD box protein A (ATP-dependent RNA helicase deaD) n=1 Tax=mine drainage metagenome RepID=E6PW23_9ZZZZ rbh
04302015_13_scaffold_29_15

Not on your lists

16212..17543
DNA (1332bp) protein (444aa)
NADH dehydrogenase {ECO:0000313|EMBL:CBH99129.1}; EC=1.6.99.3 {ECO:0000313|EMBL:CBH99129.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage
ndh; NADH dehydrogenase (EC:1.6.99.3)
NADH dehydrogenase n=1 Tax=mine drainage metagenome RepID=E6PW22_9ZZZZ rbh
04302015_13_scaffold_29_16

Not on your lists

17797..20064
DNA (2268bp) protein (756aa)
putative diguanylate cyclase (EC:2.7.7.65)
Putative diguanylate cyclase n=1 Tax=mine drainage metagenome RepID=E6PW21_9ZZZZ rbh
Putative diguanylate cyclase {ECO:0000313|EMBL:CBH99128.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
04302015_13_scaffold_29_17

Not on your lists

comp(20178..20453)
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PW20_9ZZZZ rbh
Uncharacterized protein; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
04302015_13_scaffold_29_18

Not on your lists

comp(20769..22157)
DNA (1389bp) protein (463aa)
Putative C4-DICARBOXYLATE TRANSPORT TRANSCRIPTIONAL REGULATORY PROTEIN DCTD n=1 Tax=mine drainage metagenome RepID=E6PW19_9ZZZZ rbh
Putative C4-DICARBOXYLATE TRANSPORT TRANSCRIPTIONAL REGULATORY PROTEIN DCTD {ECO:0000313|EMBL:CBH99126.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="
two component, sigma54 specific, transcriptional regulator, Fis family; K07715 two-component system, NtrC family, response regulator GlrR
04302015_13_scaffold_29_19

Not on your lists

comp(22279..22917)
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PW18_9ZZZZ rbh
Uncharacterized protein {ECO:0000313|EMBL:CBH99125.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
04302015_13_scaffold_29_20

Not on your lists

comp(22914..24455)
DNA (1542bp) protein (514aa)
integral membrane sensor signal transduction histidine kinase; K07711 two-component system, NtrC family, sensor histidine kinase GlrK [EC:2.7.13.3]
Putative sensory kinase in two-component system n=1 Tax=mine drainage metagenome RepID=E6PW17_9ZZZZ rbh
Putative sensory kinase in two-component system {ECO:0000313|EMBL:CBH99124.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
04302015_13_scaffold_29_21

Not on your lists

comp(24542..25384)
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PW16_9ZZZZ rbh
Uncharacterized protein {ECO:0000313|EMBL:CBH99123.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein; K07115 rbh
04302015_13_scaffold_29_22

Not on your lists

comp(25440..25706)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PW15_9ZZZZ rbh
Uncharacterized protein {ECO:0000313|EMBL:CBH99122.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
04302015_13_scaffold_29_23
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(25725..26882)
DNA (1158bp) protein (386aa)
Putative Permease of the major facilitator superfamily n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CN48_THIA3
putative Permease of the major facilitator superfamily
Putative Permease of the major facilitator superfamily {ECO:0000313|EMBL:CAZ89976.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomona
04302015_13_scaffold_29_24

Not on your lists

comp(26846..27895)
DNA (1050bp) protein (350aa)
Putative 3-mercaptopyruvate sulfurtransferase {ECO:0000313|EMBL:CBH99120.1}; EC=2.8.1.2 {ECO:0000313|EMBL:CBH99120.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenome
rhodanese domain-containing protein; K01011 thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
Putative 3-mercaptopyruvate sulfurtransferase n=1 Tax=mine drainage metagenome RepID=E6PW13_9ZZZZ rbh
04302015_13_scaffold_29_25

Not on your lists

comp(27997..29442)
DNA (1446bp) protein (482aa)
Putative Phospholipase D/nuclease n=1 Tax=mine drainage metagenome RepID=E6PW12_9ZZZZ rbh
Putative Phospholipase D/nuclease {ECO:0000313|EMBL:CBH99119.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
putative Phospholipase D/nuclease
04302015_13_scaffold_29_26

Not on your lists

comp(29534..30415)
DNA (882bp) protein (294aa)
Putative Endonuclease/Exonuclease/phosphatase n=1 Tax=mine drainage metagenome RepID=E6PW11_9ZZZZ rbh
Putative Endonuclease/Exonuclease/phosphatase {ECO:0000313|EMBL:CBH99118.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
endonuclease/exonuclease/phosphatase; K06896
04302015_13_scaffold_29_27

Not on your lists

comp(30418..30945)
DNA (528bp) protein (176aa)
Putative NUDIX hydrolase n=1 Tax=mine drainage metagenome RepID=E6PW10_9ZZZZ rbh
Putative NUDIX hydrolase {ECO:0000313|EMBL:CBH99117.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
putative NUDIX hydrolase
04302015_13_scaffold_29_28
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30947..32068)
DNA (1122bp) protein (374aa)
phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54); K01626 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X6X7_THIK1 rbh
04302015_13_scaffold_29_29

Not on your lists

comp(32200..33672)
DNA (1473bp) protein (491aa)
Putative Na+/metabolite cotransporter n=1 Tax=mine drainage metagenome RepID=E6PW09_9ZZZZ rbh
Putative Na+/metabolite cotransporter {ECO:0000313|EMBL:CBH99116.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
putative sodium/solute symporter
04302015_13_scaffold_29_30

Not on your lists

comp(33669..33881)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PW08_9ZZZZ rbh
Uncharacterized protein {ECO:0000313|EMBL:CBH99115.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
Displaying items 1-30 of 53 in total

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