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04302015_13_scaffold_41

Search features with annotation key words

Displaying items 1-30 of 40 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_13_scaffold_41_1
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3..212
DNA (210bp) protein (70aa)
Putative Nitrite extrusion protein (Nitrite facilitator) NarK n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLQ0_THIA3
Putative Nitrite extrusion protein (Nitrite facilitator) NarK {ECO:0000313|EMBL:CDW94463.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="T
putative Nitrite extrusion protein (Nitrite facilitator) NarK
04302015_13_scaffold_41_2
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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231..1616
DNA (1386bp) protein (462aa)
Nitrate/nitrite transporter n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLQ1_THIA3
narK; nitrate/nitrite transporter
Nitrate/nitrite transporter {ECO:0000313|EMBL:CAZ89479.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DS
04302015_13_scaffold_41_3
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1690..2319
DNA (630bp) protein (210aa)
Putative nitroreductase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLQ7_THIA3
Nitroreductase {ECO:0000313|EMBL:CDW94456.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
putative nitroreductase
04302015_13_scaffold_41_4

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comp(2849..4246)
DNA (1398bp) protein (466aa)
ATP-dependent RNA helicase {ECO:0000313|EMBL:CBH95820.1}; EC=3.6.1.- {ECO:0000313|EMBL:CBH95820.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine d
rhlE; ATP-dependent RNA helicase RhlE (EC:3.6.4.13); K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
ATP-dependent RNA helicase n=1 Tax=mine drainage metagenome RepID=E6PLL9_9ZZZZ rbh
04302015_13_scaffold_41_5
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4501..7146)
DNA (2646bp) protein (882aa)
HAD superfamily P-type ATPase; K01537 Ca2+-transporting ATPase [EC:3.6.3.8] rbh
ATPase, P-type (Transporting), HAD superfamily, subfamily IC n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y298_LEPCP rbh
ATPase, P-type (Transporting), HAD superfamily, subfamily IC {ECO:0000313|EMBL:ACB35551.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="L
04302015_13_scaffold_41_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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7305..8258
DNA (954bp) protein (318aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H6C0_ANADF id=5223528 bin=16ft_combo_ws3_JS1 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade rbh
NAD-dependent epimerase/dehydratase rbh
Tax=RBG_16_RIF_WS3X_71_46_curated
04302015_13_scaffold_41_7
unknown

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comp(8316..8801)
DNA (486bp) protein (162aa)

This feature has no annotations

04302015_13_scaffold_41_8

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8926..9381
DNA (456bp) protein (152aa)
Putative Endoribonuclease L-PSP n=1 Tax=mine drainage metagenome RepID=E6PLL8_9ZZZZ rbh
Putative Endoribonuclease L-PSP {ECO:0000313|EMBL:CBH95819.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
endoribonuclease L-psp
04302015_13_scaffold_41_9

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comp(9425..11815)
DNA (2391bp) protein (797aa)
DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A) {ECO:0000313|EMBL:CBH95818.1}; EC=5.99.1.- {ECO:0000313|EMBL:CBH95818.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecologi
DNA topoisomerase IV subunit A (EC:5.99.1.3); K02621 topoisomerase IV subunit A [EC:5.99.1.-]
DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A) n=1 Tax=mine drainage metagenome RepID=E6PLL7_9ZZZZ rbh
04302015_13_scaffold_41_10

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comp(11885..13858)
DNA (1974bp) protein (658aa)
DNA topoisomerase 4 subunit B (Topoisomerase IV subunit B) {ECO:0000313|EMBL:CBH95817.1}; EC=5.99.1.- {ECO:0000313|EMBL:CBH95817.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecologi
DNA topoisomerase IV subunit B (EC:5.99.1.3); K02622 topoisomerase IV subunit B [EC:5.99.1.-]
DNA topoisomerase 4 subunit B (Topoisomerase IV subunit B) n=1 Tax=mine drainage metagenome RepID=E6PLL6_9ZZZZ rbh
04302015_13_scaffold_41_11

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14118..14714
DNA (597bp) protein (199aa)
Putative S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=mine drainage metagenome RepID=E6PLL4_9ZZZZ rbh
Putative S-adenosyl-L-methionine-dependent methyltransferase {ECO:0000313|EMBL:CBH95815.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage m
type 11 methyltransferase
04302015_13_scaffold_41_12

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14724..15626
DNA (903bp) protein (301aa)
Dihydrodipicolinate synthase (DHDPS) {ECO:0000313|EMBL:CBH95814.1}; EC=4.2.1.52 {ECO:0000313|EMBL:CBH95814.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" sou
dihydrodipicolinate synthase (EC:4.2.1.52); K01714 dihydrodipicolinate synthase [EC:4.2.1.52]
Dihydrodipicolinate synthase (DHDPS) n=1 Tax=mine drainage metagenome RepID=E6PLL3_9ZZZZ rbh
04302015_13_scaffold_41_13

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15637..16797
DNA (1161bp) protein (387aa)
Putative NlpB/DapX lipoprotein n=1 Tax=mine drainage metagenome RepID=E6PLL2_9ZZZZ rbh
Putative NlpB/DapX lipoprotein {ECO:0000313|EMBL:CBH95813.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
NlpBDapX family lipoprotein; K07287 lipoprotein-34
04302015_13_scaffold_41_14

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comp(16938..18152)
DNA (1215bp) protein (405aa)
fatty acid desaturase; K00507 stearoyl-CoA desaturase (delta-9 desaturase) [EC:1.14.19.1]
Putative Fatty acid desaturase, type 1 n=1 Tax=mine drainage metagenome RepID=E6PLL1_9ZZZZ rbh
Putative Fatty acid desaturase, type 1 {ECO:0000313|EMBL:CBH95812.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
04302015_13_scaffold_41_15

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comp(18257..19585)
DNA (1329bp) protein (443aa)
Fmu (Sun) domain-containing protein; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
Putative RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE B (SUN) n=1 Tax=mine drainage metagenome RepID=E6PLL0_9ZZZZ rbh
Putative RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE B (SUN) {ECO:0000313|EMBL:CBH95811.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage
04302015_13_scaffold_41_16

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comp(19582..20223)
DNA (642bp) protein (214aa)
Phosphoribosylglycinamide formyltransferase (GART) (GAR transformylase) (5'-phosphoribosylglycinamide transformylase) {ECO:0000313|EMBL:CBH95810.1}; EC=2.1.2.2 {ECO:0000313|EMBL:CBH95810.1};; TaxID=41
phosphoribosylglycinamide formyltransferase (EC:2.1.2.2); K11175 phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
Phosphoribosylglycinamide formyltransferase (GART) (GAR transformylase) (5'-phosphoribosylglycinamide transformylase) n=1 Tax=mine drainage metagenome RepID=E6PLK9_9ZZZZ rbh
04302015_13_scaffold_41_17

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comp(20301..20816)
DNA (516bp) protein (172aa)
Putative TYPE 4 fimbrial BIOGENESIS TRANSMEMBRANE pilE-related PROTEIN n=1 Tax=mine drainage metagenome RepID=E6PLK8_9ZZZZ rbh
Putative TYPE 4 fimbrial BIOGENESIS TRANSMEMBRANE pilE-related PROTEIN {ECO:0000313|EMBL:CBH95809.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine
putative type-4 pilus assembly protein PilE (pilE1); K02655 type IV pilus assembly protein PilE
04302015_13_scaffold_41_18

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comp(20832..24887)
DNA (4056bp) protein (1352aa)
Putative type-4 fimbrial biogenesis pily1-related protein (Modular protein) n=1 Tax=mine drainage metagenome RepID=E6PLK7_9ZZZZ rbh
Putative type-4 fimbrial biogenesis pily1-related protein (Modular protein) {ECO:0000313|EMBL:CBH95808.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="
type-4 fimbrial biogenesis pily1-like protein; K02674 type IV pilus assembly protein PilY1
04302015_13_scaffold_41_19

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comp(24927..25523)
DNA (597bp) protein (199aa)
Putative type-4 fimbrial biogenesis transmembrane protein n=1 Tax=mine drainage metagenome RepID=E6PLK6_9ZZZZ rbh
Putative type-4 fimbrial biogenesis transmembrane protein {ECO:0000313|EMBL:CBH95807.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage meta
type-4 fimbrial biogenesis transmembrane protein; K02673 type IV pilus assembly protein PilX
04302015_13_scaffold_41_20

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comp(25520..26233)
DNA (714bp) protein (238aa)
Type-4 fimbrial biogenesis transmembrane protein n=1 Tax=mine drainage metagenome RepID=E6PLK5_9ZZZZ rbh
Type-4 fimbrial biogenesis transmembrane protein {ECO:0000313|EMBL:CBH95806.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
pilW; type 4 fimbrial biogenesis transmembrane protein; K02672 type IV pilus assembly protein PilW
04302015_13_scaffold_41_21

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comp(26230..26772)
DNA (543bp) protein (181aa)
Putative type-4 fimbrial biogenesis PilV transmembrane protein n=1 Tax=mine drainage metagenome RepID=E6PLK4_9ZZZZ rbh
Putative type-4 fimbrial biogenesis PilV transmembrane protein {ECO:0000313|EMBL:CBH95805.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage
Tfp pilus assembly protein PilV transmembrane protein (pilV); K02671 type IV pilus assembly protein PilV
04302015_13_scaffold_41_22

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comp(26769..27287)
DNA (519bp) protein (173aa)
Putative type-4 fimbrial pilin related signal peptide protein n=1 Tax=mine drainage metagenome RepID=E6PLK3_9ZZZZ rbh
Putative type-4 fimbrial pilin related signal peptide protein {ECO:0000313|EMBL:CBH95804.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage
fimT; type-4 fimbrial pilin related protein; K08084 type IV fimbrial biogenesis protein FimT
04302015_13_scaffold_41_23

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27479..27967
DNA (489bp) protein (163aa)
Transcriptional repressor nrdR n=1 Tax=mine drainage metagenome RepID=E6PLK2_9ZZZZ rbh
Transcriptional repressor nrdR {ECO:0000313|EMBL:CBH95803.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
nrdR; Transcriptional repressor nrdR
04302015_13_scaffold_41_24
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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28033..29172
DNA (1140bp) protein (380aa)
hypothetical protein n=1 Tax=Thiomonas sp. FB-6 RepID=UPI00036BCC2D rbh
ribD; Riboflavin biosynthesis protein ribD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (Riboflavin-specific deaminase); 5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP redu
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans
04302015_13_scaffold_41_25

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comp(29215..30441)
DNA (1227bp) protein (409aa)
Putative aspartate aminotransferase {ECO:0000313|EMBL:CBH95801.1}; EC=2.6.1.1 {ECO:0000313|EMBL:CBH95801.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" sourc
putative aspartate aminotransferase (EC:2.6.1.1)
Putative aspartate aminotransferase n=1 Tax=mine drainage metagenome RepID=E6PLK0_9ZZZZ rbh
04302015_13_scaffold_41_26

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comp(30459..31136)
DNA (678bp) protein (226aa)
Putative NusB antitermination factor n=1 Tax=mine drainage metagenome RepID=E6PLJ9_9ZZZZ rbh
Putative NusB antitermination factor {ECO:0000313|EMBL:CBH95800.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
putative NusB antitermination factor
04302015_13_scaffold_41_27

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comp(31207..31674)
DNA (468bp) protein (156aa)
6,7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (Lumazine synthase) (Riboflavin synthase beta chain) {ECO:0000313|EMBL:CBH95799.1}; EC=2.5.1.9 {ECO:0000313|EMBL:CBH95799.1};; TaxID=410659 spec
6,7-dimethyl-8-ribityllumazine synthase; K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
6,7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (Lumazine synthase) (Riboflavin synthase beta chain) n=1 Tax=mine drainage metagenome RepID=E6PLJ8_9ZZZZ rbh
04302015_13_scaffold_41_28

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comp(31717..32865)
DNA (1149bp) protein (383aa)
Riboflavin biosynthesis protein ribAB {ECO:0000313|EMBL:CBH95798.1}; EC=3.5.4.25 {ECO:0000313|EMBL:CBH95798.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" so
ribAB; Riboflavin biosynthesis protein ribAB [Includes: GTP cyclohydrolase-2 (GTP cyclohydrolase II); 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase)] (EC:4.1.99.12)
Riboflavin biosynthesis protein ribAB n=1 Tax=mine drainage metagenome RepID=E6PLJ7_9ZZZZ rbh
04302015_13_scaffold_41_29

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comp(32972..36889)
DNA (3918bp) protein (1306aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PLJ6_9ZZZZ rbh
Uncharacterized protein {ECO:0000313|EMBL:CBH95797.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein rbh
04302015_13_scaffold_41_30

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comp(36890..38746)
DNA (1857bp) protein (619aa)
Putative outer membrane protein, antigen n=1 Tax=mine drainage metagenome RepID=E6PLJ5_9ZZZZ rbh
Putative outer membrane protein, antigen {ECO:0000313|EMBL:CBH95796.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
surface antigen (D15)
Displaying items 1-30 of 40 in total

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