ggKbase home page

04302015_13_scaffold_53

Search features with annotation key words

Displaying 27 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_13_scaffold_53_1

Not on your lists

2..514
DNA (513bp) protein (171aa)
Shikimate kinase {ECO:0000313|EMBL:CBH98922.1}; EC=2.7.1.71 {ECO:0000313|EMBL:CBH98922.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage m
aroK; Shikimate kinase (EC:2.7.1.71)
Shikimate kinase n=1 Tax=mine drainage metagenome RepID=E6PVG5_9ZZZZ rbh
04302015_13_scaffold_53_2

Not on your lists

626..1777
DNA (1152bp) protein (384aa)
3-dehydroquinate synthase {ECO:0000313|EMBL:CBH98923.1}; EC=4.2.3.4 {ECO:0000313|EMBL:CBH98923.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine dr
aroB; 3-dehydroquinate synthase (EC:4.2.3.4) rbh
3-dehydroquinate synthase n=1 Tax=mine drainage metagenome RepID=E6PVG6_9ZZZZ rbh
04302015_13_scaffold_53_3

Not on your lists

1821..2978
DNA (1158bp) protein (386aa)
Putative Deoxyguanosinetriphosphate triphosphohydrolase {ECO:0000313|EMBL:CBH98924.1}; EC=3.1.5.1 {ECO:0000313|EMBL:CBH98924.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological
Putative Deoxyguanosinetriphosphate triphosphohydrolase (EC:3.1.5.1)
Putative Deoxyguanosinetriphosphate triphosphohydrolase n=1 Tax=mine drainage metagenome RepID=E6PVG7_9ZZZZ rbh
04302015_13_scaffold_53_4

Not on your lists

3128..3691
DNA (564bp) protein (188aa)
Putative Transcriptional regulator (MarR family) n=1 Tax=mine drainage metagenome RepID=E6PVG8_9ZZZZ
Putative Transcriptional regulator (MarR family) {ECO:0000313|EMBL:CBH98925.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
MarR family transcriptional regulator
04302015_13_scaffold_53_5

Not on your lists

3708..5246
DNA (1539bp) protein (513aa)
Putative RND efflux system outer membrane lipoprotein NodT n=1 Tax=mine drainage metagenome RepID=E6PVG9_9ZZZZ rbh
Putative RND efflux system outer membrane lipoprotein NodT {ECO:0000313|EMBL:CBH98926.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage met
NodT family RND efflux system outer membrane lipoprotein
04302015_13_scaffold_53_6

Not on your lists

5282..6565
DNA (1284bp) protein (428aa)
Putative Multidrug resistance protein A EmrA n=1 Tax=mine drainage metagenome RepID=E6PVH0_9ZZZZ
Putative Multidrug resistance protein A EmrA {ECO:0000313|EMBL:CBH98927.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
emrA; Multidrug resistance protein A EmrA
04302015_13_scaffold_53_7
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6579..8189
DNA (1611bp) protein (537aa)
Drug resistance transporter, EmrB/QacA subfamily n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X3R5_THIK1 rbh
EmrB/QacA subfamily drug resistance transporter; K03446 MFS transporter, DHA2 family, multidrug resistance protein B rbh
Drug resistance transporter, EmrB/QacA subfamily {ECO:0000313|EMBL:ADG29641.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas inter
04302015_13_scaffold_53_8

Not on your lists

8226..8870
DNA (645bp) protein (215aa)
putative Phosphoglycerate mutase (PGAM) (EC:5.4.2.1)
Putative Phosphoglycerate mutase (PGAM) n=1 Tax=mine drainage metagenome RepID=E6PVH3_9ZZZZ rbh
Putative Phosphoglycerate mutase (PGAM) {ECO:0000313|EMBL:CBH98930.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
04302015_13_scaffold_53_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9007..9723
DNA (717bp) protein (239aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003795F14 rbh
CBS domain-containing protein
Tax=GWE1_Thiobacillus_62_9_curated
04302015_13_scaffold_53_10
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9843..11654
DNA (1812bp) protein (604aa)
hypothetical protein n=1 Tax=Thiomonas sp. FB-6 RepID=UPI0003659527
eriC; chloride channel
Chloride channel {ECO:0000313|EMBL:CAN90600.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosu
04302015_13_scaffold_53_11
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11670..12809)
DNA (1140bp) protein (380aa)
C4-dicarboxylate transporter/malic acid transport protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5WZ87_THIK1 rbh
C4-dicarboxylate transporter/malic acid transport protein
C4-dicarboxylate transporter/malic acid transport protein {ECO:0000313|EMBL:ADG32285.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomo
04302015_13_scaffold_53_12

Not on your lists

12978..13949
DNA (972bp) protein (324aa)
Transcriptional regulator, LysR family n=1 Tax=mine drainage metagenome RepID=E6PMI3_9ZZZZ rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:CBH96135.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
transcriptional regulator, LysR family rbh
04302015_13_scaffold_53_13

Not on your lists

14140..15774
DNA (1635bp) protein (545aa)
Putative permease of the major facilitator superfamily (MFS) n=1 Tax=mine drainage metagenome RepID=E6PMI4_9ZZZZ
Putative permease of the major facilitator superfamily (MFS) {ECO:0000313|EMBL:CBH96136.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage m
major facilitator superfamily protein
04302015_13_scaffold_53_14

Not on your lists

15875..17689
DNA (1815bp) protein (605aa)
fdwB; tungsten-containing formate dehydrogenase beta subunit (EC:1.2.1.2); K00335 NADH-quinone oxidoreductase subunit F [EC:1.6.5.3]
Tungsten-containing formate dehydrogenase beta subunit n=1 Tax=mine drainage metagenome RepID=E6PMI5_9ZZZZ rbh
Tungsten-containing formate dehydrogenase beta subunit {ECO:0000313|EMBL:CBH96137.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagen
04302015_13_scaffold_53_15
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17724..20651
DNA (2928bp) protein (976aa)
formate dehydrogenase subunit alpha; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2]
Formate dehydrogenase, alpha subunit n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MEW1_ACIET
Formate dehydrogenase, alpha subunit {ECO:0000313|EMBL:ACM34231.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovora
04302015_13_scaffold_53_16

Not on your lists

20842..21267
DNA (426bp) protein (142aa)
Putative transcriptional regulator, LysR family (Modular protein) n=1 Tax=mine drainage metagenome RepID=E6PMI9_9ZZZZ rbh
Putative transcriptional regulator, LysR family (Modular protein) {ECO:0000313|EMBL:CBH96141.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drain
Putative transcriptional regulator, ModE family
04302015_13_scaffold_53_17

Not on your lists

21601..22533
DNA (933bp) protein (311aa)
Putative ABC-type transport system, periplasmic component n=1 Tax=mine drainage metagenome RepID=E6PMJ1_9ZZZZ
Putative ABC-type transport system, periplasmic component {ECO:0000313|EMBL:CBH96143.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage meta
extracellular solute-binding protein; K02061 putative sulfate transport system substrate-binding protein
04302015_13_scaffold_53_18

Not on your lists

22570..23412
DNA (843bp) protein (281aa)
Putative ABC-type transport system, permease component n=1 Tax=mine drainage metagenome RepID=E6PMJ4_9ZZZZ
Putative ABC-type transport system, permease component {ECO:0000313|EMBL:CBH96146.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagen
Putative Tungstate/molybdate transport system permease protein, modB
04302015_13_scaffold_53_19

Not on your lists

23416..24456
DNA (1041bp) protein (347aa)
Putative ABC transporter, ATPase components (EC:3.6.3.29)
Putative ABC-type transport system, ATPase component n=1 Tax=mine drainage metagenome RepID=E6PMJ5_9ZZZZ rbh
Putative ABC-type transport system, ATPase component {ECO:0000313|EMBL:CBH96147.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenom
04302015_13_scaffold_53_20

Not on your lists

comp(24529..25698)
DNA (1170bp) protein (390aa)
8-amino-7-oxononanoate synthase {ECO:0000313|EMBL:CBH96150.1}; EC=2.3.1.47 {ECO:0000313|EMBL:CBH96150.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="
8-amino-7-oxononanoate synthase (EC:2.3.1.47); K00652 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
8-amino-7-oxononanoate synthase n=1 Tax=mine drainage metagenome RepID=E6PMJ8_9ZZZZ rbh
04302015_13_scaffold_53_21

Not on your lists

comp(25695..26366)
DNA (672bp) protein (224aa)
Dethiobiotin synthetase (Dethiobiotin synthase) (DTB synthetase) (DTBS) {ECO:0000313|EMBL:CBH96151.1}; EC=6.3.3.3 {ECO:0000313|EMBL:CBH96151.1};; TaxID=410659 species="unclassified sequences; metageno
dethiobiotin synthase; K01935 dethiobiotin synthetase [EC:6.3.3.3]
Dethiobiotin synthetase (Dethiobiotin synthase) (DTB synthetase) (DTBS) n=1 Tax=mine drainage metagenome RepID=E6PMJ9_9ZZZZ rbh
04302015_13_scaffold_53_22

Not on your lists

comp(26375..27745)
DNA (1371bp) protein (457aa)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (7,8-diamino-pelargonic acid aminotransferase) (DAPA aminotransferase) {ECO:0000313|EMBL:CBH96152.1}; EC=2.6.1.62 {ECO:0000313|EMBL:CBH96152.
adenosylmethionine--8-amino-7-oxononanoate aminotransferase (EC:2.6.1.62); K00833 adenosylmethionine-8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] rbh
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (7,8-diamino-pelargonic acid aminotransferase) (DAPA aminotransferase) n=1 Tax=mine drainage metagenome RepID=E6PMK0_9ZZZZ rbh
04302015_13_scaffold_53_23

Not on your lists

28065..29300
DNA (1236bp) protein (412aa)
Sulfite:cytochrome c oxidoreductase subunit A {ECO:0000313|EMBL:CBH96153.1}; EC=1.8.3.1 {ECO:0000313|EMBL:CBH96153.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenome
Sulfite:cytochrome c oxidoreductase subunit A n=1 Tax=mine drainage metagenome RepID=E6PMK1_9ZZZZ rbh
oxidoreductase molybdopterin binding protein
04302015_13_scaffold_53_24

Not on your lists

29312..29605
DNA (294bp) protein (98aa)
Putative Sulfite:cytochrome c oxidoreductase subunit B SorB-like n=1 Tax=mine drainage metagenome RepID=E6PMK2_9ZZZZ rbh
Putative Sulfite:cytochrome c oxidoreductase subunit B SorB-like {ECO:0000313|EMBL:CBH96154.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine draina
sorB; sulfite:cytochrome c oxidoreductase subunit B
04302015_13_scaffold_53_25

Not on your lists

29737..30990
DNA (1254bp) protein (418aa)
hippuricase; K01451 hippurate hydrolase [EC:3.5.1.32]
Putative Metal-dependent amidase/aminoacylase/carboxypeptidase n=1 Tax=mine drainage metagenome RepID=E6PMK3_9ZZZZ rbh
Putative Metal-dependent amidase/aminoacylase/carboxypeptidase {ECO:0000313|EMBL:CBH96155.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage
04302015_13_scaffold_53_26

Not on your lists

31073..31318
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PMK5_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBH96157.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
conserved hypothetical protein (Transglycosylase-associated gene protein)
04302015_13_scaffold_53_27

Not on your lists

comp(31559..32809)
DNA (1251bp) protein (417aa)
Tyrosyl-tRNA synthetase (Tyrosine--tRNA ligase) (TyrRS) (TyrRZ) {ECO:0000313|EMBL:CBH96158.1}; EC=6.1.1.1 {ECO:0000313|EMBL:CBH96158.1};; TaxID=410659 species="unclassified sequences; metagenomes; eco
tyrosyl-tRNA synthetase; K01866 tyrosyl-tRNA synthetase [EC:6.1.1.1] rbh
Tyrosyl-tRNA synthetase (Tyrosine--tRNA ligase) (TyrRS) (TyrRZ) n=1 Tax=mine drainage metagenome RepID=E6PMK6_9ZZZZ rbh
Displaying 27 items

View Taxonomy