ggKbase home page

04302015_13_scaffold_111

Search features with annotation key words

Displaying 23 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_13_scaffold_111_1
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..316)
DNA (315bp) protein (105aa)
ChaC family protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X6G8_THIK1
ChaC family protein; K07232 cation transport protein ChaC
ChaC family protein {ECO:0000313|EMBL:CDW94346.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
04302015_13_scaffold_111_2

Not on your lists

comp(351..1838)
DNA (1488bp) protein (496aa)
Glutamate synthase (NADPH) small chain (NADPH-GOGAT) {ECO:0000313|EMBL:CBH95738.1}; EC=1.4.1.13 {ECO:0000313|EMBL:CBH95738.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological me
gltD; Glutamate synthase [NADPH] small chain (NADPH-GOGAT) (EC:1.4.1.13)
Glutamate synthase (NADPH) small chain (NADPH-GOGAT) n=1 Tax=mine drainage metagenome RepID=E6PLD7_9ZZZZ rbh
04302015_13_scaffold_111_3

Not on your lists

comp(2012..6751)
DNA (4740bp) protein (1580aa)
Ferredoxin-dependent glutamate synthase 1 {ECO:0000313|EMBL:CBH95737.1}; EC=1.4.7.1 {ECO:0000313|EMBL:CBH95737.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;"
gltB; Ferredoxin-dependent glutamate synthase 1 (EC:1.4.7.1) rbh
Ferredoxin-dependent glutamate synthase 1 n=1 Tax=mine drainage metagenome RepID=E6PLD6_9ZZZZ rbh
04302015_13_scaffold_111_4

Not on your lists

comp(6923..7681)
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PLD5_9ZZZZ rbh
Uncharacterized protein {ECO:0000313|EMBL:CBH95736.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Conserved hypothetical protein; putative AraC type domain
04302015_13_scaffold_111_5

Not on your lists

comp(7739..10474)
DNA (2736bp) protein (912aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PQF1_9ZZZZ rbh
Uncharacterized protein {ECO:0000313|EMBL:CBH97155.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
diguanylate cyclase/phosphodiesterase
04302015_13_scaffold_111_6

Not on your lists

comp(10722..11822)
DNA (1101bp) protein (367aa)
quinolinate synthetase complex subunit A; K03517 quinolinate synthase [EC:2.5.1.72]
Quinolinate synthetase A n=1 Tax=mine drainage metagenome RepID=E6PVW7_9ZZZZ rbh
Quinolinate synthetase A {ECO:0000313|EMBL:CBH99074.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
04302015_13_scaffold_111_7

Not on your lists

comp(11856..12701)
DNA (846bp) protein (282aa)
Nicotinate-nucleotide pyrophosphorylase (Carboxylating) (Quinolinate phosphoribosyltransferase (Decarboxylating)) (QAPRTase) {ECO:0000313|EMBL:CBH99072.1}; EC=2.4.2.19 {ECO:0000313|EMBL:CBH99072.1};;
nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19); K00767 nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
Nicotinate-nucleotide pyrophosphorylase (Carboxylating) (Quinolinate phosphoribosyltransferase (Decarboxylating)) (QAPRTase) n=1 Tax=mine drainage metagenome RepID=E6PVW5_9ZZZZ rbh
04302015_13_scaffold_111_8

Not on your lists

12980..13789
DNA (810bp) protein (270aa)
Putative Cyclic nucleotide-binding:Bacterial regulatory protein, Crp n=1 Tax=mine drainage metagenome RepID=E6PVW4_9ZZZZ rbh
Putative Cyclic nucleotide-binding:Bacterial regulatory protein, Crp {ECO:0000313|EMBL:CBH99071.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine dr
Crp/Fnr family transcriptional regulator
04302015_13_scaffold_111_9

Not on your lists

comp(13823..14443)
DNA (621bp) protein (207aa)
Putative ATPase involved in chromosome partitioning n=1 Tax=mine drainage metagenome RepID=E6PVW3_9ZZZZ rbh
Putative ATPase involved in chromosome partitioning {ECO:0000313|EMBL:CBH99070.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome
chromosome partitioning-related ATPase; K03496 chromosome partitioning protein
04302015_13_scaffold_111_10

Not on your lists

comp(14520..15110)
DNA (591bp) protein (197aa)
Oxidoreductase subunit of the alternative pyrimidine degradation pathway n=1 Tax=mine drainage metagenome RepID=E6PVW2_9ZZZZ rbh
Oxidoreductase subunit of the alternative pyrimidine degradation pathway {ECO:0000313|EMBL:CBH99069.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="min
rutE; oxidoreductase subunit of the alternative pyrimidine degradation pathway
04302015_13_scaffold_111_11

Not on your lists

15199..15627
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PVW1_9ZZZZ rbh
Uncharacterized protein {ECO:0000313|EMBL:CBH99068.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
04302015_13_scaffold_111_12
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15639..16868)
DNA (1230bp) protein (410aa)
membrane protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI00030CA2FF rbh
ABC transporter periplasmic protein; K02058 simple sugar transport system substrate-binding protein
Candidate Uncharacterized ABC type transport system, periplasmic component {ECO:0000313|EMBL:AEG94333.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonad
04302015_13_scaffold_111_13
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16948..18021)
DNA (1074bp) protein (358aa)
putative adenosine deaminase (EC:3.5.4.4)
Adenine deaminase {ECO:0000256|HAMAP-Rule:MF_01962}; Short=ADE {ECO:0000256|HAMAP-Rule:MF_01962};; EC=3.5.4.2 {ECO:0000256|HAMAP-Rule:MF_01962};; Adenine aminohydrolase {ECO:0000256|HAMAP-Rule:MF_0196
Putative adenosine deaminase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CT31_THIA3
04302015_13_scaffold_111_14

Not on your lists

comp(18018..19106)
DNA (1089bp) protein (363aa)
Putative ABC-type transport system, periplasmic component n=1 Tax=mine drainage metagenome RepID=E6PVV3_9ZZZZ rbh
Putative ABC-type transport system, periplasmic component {ECO:0000313|EMBL:CBH99060.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage meta
putative ABC-type transport system, periplasmic component
04302015_13_scaffold_111_15

Not on your lists

comp(19199..20113)
DNA (915bp) protein (305aa)
Putative ABC-type transport system, permease component n=1 Tax=mine drainage metagenome RepID=E6PVV2_9ZZZZ rbh
Putative ABC-type transport system, permease component {ECO:0000313|EMBL:CBH99059.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagen
inner-membrane translocator; K02057 simple sugar transport system permease protein
04302015_13_scaffold_111_16

Not on your lists

comp(20106..21179)
DNA (1074bp) protein (358aa)
Putative ABC-type transport system, permease component n=1 Tax=mine drainage metagenome RepID=E6PVV1_9ZZZZ rbh
Putative ABC-type transport system, permease component {ECO:0000313|EMBL:CBH99058.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagen
putative ABC-type transport system, permease component
04302015_13_scaffold_111_17

Not on your lists

comp(21166..22728)
DNA (1563bp) protein (521aa)
putative ABC transporter ATP-binding protein; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17] rbh
Putative ABC-type transport system, ATP-binding protein n=1 Tax=mine drainage metagenome RepID=E6PVV0_9ZZZZ rbh
Putative ABC-type transport system, ATP-binding protein {ECO:0000313|EMBL:CBH99057.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metage
04302015_13_scaffold_111_18

Not on your lists

comp(22743..24122)
DNA (1380bp) protein (460aa)
putative guanine deaminase (EC:3.5.4.3)
Putative guanine deaminase n=1 Tax=mine drainage metagenome RepID=E6PVU9_9ZZZZ
Putative guanine deaminase {ECO:0000313|EMBL:CBH99056.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
04302015_13_scaffold_111_19

Not on your lists

comp(24143..24430)
DNA (288bp) protein (96aa)
Putative transcriptional regulator (LysR family) n=1 Tax=mine drainage metagenome RepID=E6PVU8_9ZZZZ
Putative transcriptional regulator (LysR family) {ECO:0000313|EMBL:CBH99055.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
putative transcriptional regulator (LysR family)
04302015_13_scaffold_111_20
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24643..24972
DNA (330bp) protein (110aa)
Uncharacterized protein {ECO:0000313|EMBL:AKF08705.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandara
04302015_13_scaffold_111_21

Not on your lists

25107..26741
DNA (1635bp) protein (545aa)
Xanthine dehydrogenase small subunit {ECO:0000313|EMBL:CBH99054.1}; EC=1.17.1.4 {ECO:0000313|EMBL:CBH99054.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" sou
xdhA; Xanthine dehydrogenase small subunit (EC:1.17.1.4)
Xanthine dehydrogenase small subunit n=1 Tax=mine drainage metagenome RepID=E6PVU7_9ZZZZ rbh
04302015_13_scaffold_111_22
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26738..29200
DNA (2463bp) protein (821aa)
Xanthine dehydrogenase large subunit {ECO:0000313|EMBL:CAZ88440.1}; EC=1.17.1.4 {ECO:0000313|EMBL:CAZ88440.1};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thi
xdhB; Xanthine dehydrogenase large subunit (EC:1.17.1.4) rbh
Xanthine dehydrogenase large subunit n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CT21_THIA3 rbh
04302015_13_scaffold_111_23

Not on your lists

29229..30095
DNA (867bp) protein (289aa)
Putative Xanthine and CO dehydrogenases maturation factor n=1 Tax=mine drainage metagenome RepID=E6PVU5_9ZZZZ rbh
Putative Xanthine and CO dehydrogenases maturation factor {ECO:0000313|EMBL:CBH99052.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage meta
hypothetical protein; K07402 xanthine dehydrogenase accessory factor
Displaying 23 items

View Taxonomy