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04302015_13_scaffold_238

Search features with annotation key words

Displaying 22 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_13_scaffold_238_1
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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11..256
DNA (246bp) protein (82aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L115_HALNC rbh
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
4Fe-4S ferredoxin iron-sulfur binding domain protein {ECO:0000313|EMBL:ACX96388.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobaci
04302015_13_scaffold_238_2
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(354..623)
DNA (270bp) protein (90aa)
Putative uncharacterized protein n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L116_HALNC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACX96389.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacil
04302015_13_scaffold_238_3
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(620..1915)
DNA (1296bp) protein (432aa)
seryl-tRNA synthetase (EC:6.1.1.11); K01875 seryl-tRNA synthetase [EC:6.1.1.11]
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000
Serine--tRNA ligase n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L117_HALNC rbh
04302015_13_scaffold_238_4
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1947..2423)
DNA (477bp) protein (159aa)
Transcription elongation factor GreA n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L118_HALNC rbh
transcription elongation factor GreA; K03624 transcription elongation factor GreA
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=555778 species="Bacteria
04302015_13_scaffold_238_5
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2423..3736)
DNA (1314bp) protein (438aa)
carbamoyl-phosphate synthase, large subunit; K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria;
Carbamoyl-phosphate synthase large chain n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L119_HALNC
04302015_13_scaffold_238_6
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3709..5562)
DNA (1854bp) protein (618aa)
carbamoyl-phosphate synthase, large subunit; K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria;
Carbamoyl-phosphate synthase large chain n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L119_HALNC
04302015_13_scaffold_238_7
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5650..6678)
DNA (1029bp) protein (343aa)
carbamoyl-phosphate synthase, small subunit; K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_012
Carbamoyl-phosphate synthase small chain n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L120_HALNC rbh
04302015_13_scaffold_238_8
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6921..7850)
DNA (930bp) protein (310aa)
dihydrodipicolinate reductase (EC:1.3.1.26); K00215 dihydrodipicolinate reductase [EC:1.3.1.26]
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rul
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L121_HALNC rbh
04302015_13_scaffold_238_9
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7910..8728
DNA (819bp) protein (273aa)
rhodanese; K01011 thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
Rhodanese domain protein n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L122_HALNC rbh
Rhodanese domain protein {ECO:0000313|EMBL:ACX96395.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobaci
04302015_13_scaffold_238_10
Shewanella loihica, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8761..10509)
DNA (1749bp) protein (583aa)
Sulphate transporter n=1 Tax=Shewanella loihica (strain ATCC BAA-1088 / PV-4) RepID=A3QA71_SHELP rbh
putative sulfate transporter YchM; K03321 sulfate permease, SulP family rbh
Sulphate transporter {ECO:0000313|EMBL:ABO22369.1}; Flags: Precursor;; TaxID=323850 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewa
04302015_13_scaffold_238_11
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10747..11298)
DNA (552bp) protein (184aa)
exonuclease RNase T and DNA polymerase III; K13288 oligoribonuclease [EC:3.1.-.-]
Oligoribonuclease {ECO:0000256|HAMAP-Rule:MF_00045}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00045};; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillace
Oligoribonuclease n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L123_HALNC rbh
04302015_13_scaffold_238_12
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11487..12932
DNA (1446bp) protein (482aa)
Magnesium transporter n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L124_HALNC rbh
magnesium transporter; K06213 magnesium transporter
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothio
04302015_13_scaffold_238_13
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12929..13894
DNA (966bp) protein (322aa)
ribosome small subunit-dependent GTPase A; K06949 ribosome biogenesis GTPase [EC:3.6.1.-]
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromati
Putative ribosome biogenesis GTPase RsgA n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L125_HALNC rbh
04302015_13_scaffold_238_14
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13917..14261)
DNA (345bp) protein (115aa)
Histidine triad (HIT) protein n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L126_HALNC rbh
histidine triad (HIT) protein; K02503 Hit-like protein involved in cell-cycle regulation
Histidine triad (HIT) protein {ECO:0000313|EMBL:ACX96399.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothi
04302015_13_scaffold_238_15
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14601..15023
DNA (423bp) protein (141aa)
Putative uncharacterized protein n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L127_HALNC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACX96400.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacil
04302015_13_scaffold_238_16
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15133..16482)
DNA (1350bp) protein (450aa)
lytic transglycosylase; K08307 membrane-bound lytic murein transglycosylase D [EC:3.2.1.-]
Lytic transglycosylase catalytic n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L128_HALNC rbh
Lytic transglycosylase catalytic {ECO:0000313|EMBL:ACX96401.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halo
04302015_13_scaffold_238_17
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16756..17556)
DNA (801bp) protein (267aa)
hydroxyacylglutathione hydrolase (EC:3.1.2.6); K01069 hydroxyacylglutathione hydrolase [EC:3.1.2.6]
Hydroxyacylglutathione hydrolase {ECO:0000256|HAMAP-Rule:MF_01374, ECO:0000256|SAAS:SAAS00035352}; EC=3.1.2.6 {ECO:0000256|HAMAP-Rule:MF_01374, ECO:0000256|SAAS:SAAS00035352};; Glyoxalase II {ECO:0000
Hydroxyacylglutathione hydrolase n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L129_HALNC
04302015_13_scaffold_238_18
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17735..18409)
DNA (675bp) protein (225aa)
Putative uncharacterized protein n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L130_HALNC rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACX96403.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacil
04302015_13_scaffold_238_19
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18521..19015)
DNA (495bp) protein (165aa)
ribosomal-protein-alanine acetyltransferase (EC:2.3.1.128); K03789 ribosomal-protein-alanine N-acetyltransferase [EC:2.3.1.128]
Ribosomal-protein-alanine acetyltransferase {ECO:0000313|EMBL:ACX96404.1}; EC=2.3.1.128 {ECO:0000313|EMBL:ACX96404.1};; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiale
Ribosomal-protein-alanine acetyltransferase n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L131_HALNC
04302015_13_scaffold_238_20
unknown

Not on your lists

comp(19026..19523)
DNA (498bp) protein (166aa)

This feature has no annotations

04302015_13_scaffold_238_21
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19462..21042)
DNA (1581bp) protein (527aa)
2-isopropylmalate synthase; K01649 2-isopropylmalate synthase [EC:2.3.3.13]
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00049060}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00085331};; Alpha-IPM synthase {ECO:0000
2-isopropylmalate synthase n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L133_HALNC rbh
04302015_13_scaffold_238_22
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21473..22504
DNA (1032bp) protein (344aa)
Transcriptional regulator, MerR family n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L134_HALNC rbh
MerR family transcriptional regulator
Transcriptional regulator, MerR family {ECO:0000313|EMBL:ACX96407.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source
Displaying 22 items

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