ggKbase home page

04302015_16_scaffold_812

Search features with annotation key words

Displaying 22 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_16_scaffold_812_1
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48..782)
DNA (735bp) protein (245aa)
RNA polymerase sigma factor n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003A7BE3B
ECF-type sigma factor
Uncharacterized protein {ECO:0000313|EMBL:EKU72435.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
04302015_16_scaffold_812_2
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

932..1189
DNA (258bp) protein (86aa)
XRE-family transcriptional regulator protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8SQ01_9SPHN
XRE-family transcriptional regulator protein {ECO:0000313|EMBL:EJU14819.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
Xre-family transcriptional regulator
04302015_16_scaffold_812_3
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1222..1482
DNA (261bp) protein (87aa)
Uncharacterized protein n=4 Tax=Sphingomonadaceae RepID=T0IM45_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB29920.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
hypothetical protein
04302015_16_scaffold_812_4
Caenorhabditis japonica, Caenorhabditis, Rhabditida, Chromadorea, Nematoda, Metazoa

Not on your lists

comp(1534..1794)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Caenorhabditis japonica RepID=K7HCS5_CAEJA
Uncharacterized protein {ECO:0000313|EnsemblMetazoa:CJA25659a}; TaxID=281687 species="Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.;" source="Caenorhabditis japonica.;"
04302015_16_scaffold_812_5
unknown

Not on your lists

comp(2172..2618)
DNA (447bp) protein (149aa)

This feature has no annotations

04302015_16_scaffold_812_6
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2666..2878)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Caenorhabditis japonica RepID=K7HCS4_CAEJA
Uncharacterized protein {ECO:0000313|EMBL:GAK73081.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
04302015_16_scaffold_812_7
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2875..3138)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8W583_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU14821.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
hypothetical protein
04302015_16_scaffold_812_8
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3201..3422)
DNA (222bp) protein (74aa)
Uncharacterized protein n=7 Tax=Sphingomonadaceae RepID=G6ELJ3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB29922.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
hypothetical protein
04302015_16_scaffold_812_9
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3720..4037)
DNA (318bp) protein (106aa)
Uncharacterized protein n=4 Tax=Sphingomonadaceae RepID=G6ELJ4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EHJ57875.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
04302015_16_scaffold_812_10
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4259..4711)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CKQ7_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:EKU72443.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
04302015_16_scaffold_812_11
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4773..5393)
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6ELJ6_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EHJ57877.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
hypothetical protein rbh
04302015_16_scaffold_812_12
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5405..6214)
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VRR7_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EJU10733.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
hypothetical protein rbh
04302015_16_scaffold_812_13
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6211..6459)
DNA (249bp) protein (83aa)
Uncharacterized protein (Fragment) n=1 Tax=Sphingomonas sp. LH128 RepID=J8VD37_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU10732.1}; Flags: Fragment;; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
hypothetical protein
04302015_16_scaffold_812_14
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6776..8227)
DNA (1452bp) protein (484aa)
DNA methyltransferase n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003B361E9 rbh
Putative DNA methyltransferase {ECO:0000313|EMBL:EJU10803.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
putative DNA methyltransferase rbh
04302015_16_scaffold_812_15
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8230..8490)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VDB5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU10802.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
hypothetical protein
04302015_16_scaffold_812_16
Sphingobium sp. HDIP04, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8608..8754)
DNA (147bp) protein (49aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0GW62_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB08216.1}; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. HDIP04.;"
04302015_16_scaffold_812_17
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9591..9881
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VJP7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU10800.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
hypothetical protein
04302015_16_scaffold_812_18
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9923..10456)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CNM7_SPHYA rbh
Uncharacterized protein {ECO:0000313|EMBL:EKU72456.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
hypothetical protein rbh
04302015_16_scaffold_812_19
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10453..10662)
DNA (210bp) protein (70aa)
Uncharacterized protein n=8 Tax=Sphingomonadaceae RepID=D4Z8J7_SPHJU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKU72457.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
04302015_16_scaffold_812_20
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10675..10941)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8SDN7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU10984.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
hypothetical protein
04302015_16_scaffold_812_21
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10938..11225)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VK42_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU10985.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
hypothetical protein
04302015_16_scaffold_812_22

Not on your lists

comp(11237..11626)
DNA (390bp) protein (130aa)
Uncharacterized protein n=2 Tax=Bacteria RepID=J8VU81_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAF30432.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 22 items

View Taxonomy