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04302015_16_scaffold_498

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Displaying items 1-30 of 35 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_16_scaffold_498_1
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19..678)
DNA (660bp) protein (220aa)
GTPase Era n=1 Tax=Acidovorax sp. NO-1 RepID=H0BV35_9BURK
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
era; GTPase Era
04302015_16_scaffold_498_2
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1000..1683)
DNA (684bp) protein (228aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
rnc; ribonuclease III (EC:3.1.26.3) rbh
Ribonuclease 3 n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T2J6_ACIDE rbh
04302015_16_scaffold_498_3

Not on your lists

comp(1684..2046)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DK85_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD97676.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
transmembrane protein
04302015_16_scaffold_498_4

Not on your lists

comp(2082..2630)
DNA (549bp) protein (183aa)
Signal peptidase I {ECO:0000256|RuleBase:RU003993}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Signal peptidase I n=1 Tax=uncultured bacterium RepID=K2DI19_9BACT
signal peptidase I
04302015_16_scaffold_498_5
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2572..2934)
DNA (363bp) protein (121aa)
Signal peptidase I {ECO:0000256|RuleBase:RU003993}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993};; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
Signal peptidase I n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T2J4_ACIDE
signal peptidase I
04302015_16_scaffold_498_6
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2934..4742)
DNA (1809bp) protein (603aa)
Elongation factor 4 n=1 Tax=Acidovorax sp. NO-1 RepID=H0BV39_9BURK rbh
GTP-binding protein LepA; K03596 GTP-binding protein LepA rbh
Tax=GWA2_Burkholderiales_64_37_curated
04302015_16_scaffold_498_7

Not on your lists

comp(5253..6719)
DNA (1467bp) protein (489aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DMC3_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKD98426.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
protease Do rbh
04302015_16_scaffold_498_8
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7227..7844)
DNA (618bp) protein (206aa)
Anti sigma-E protein, RseA n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T2J0_ACIDE rbh
Anti sigma-E protein, RseA {ECO:0000313|EMBL:EER61302.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
anti sigma-e protein rsea family protein; K03597 sigma-E factor negative regulatory protein RseA
04302015_16_scaffold_498_9
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7915..8706)
DNA (792bp) protein (264aa)
RNA polymerase sigma factor n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T2I9_ACIDE rbh
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
RNA polymerase sigma factor RpoE rbh
04302015_16_scaffold_498_10
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9177..10421)
DNA (1245bp) protein (415aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T2I8_ACIDE rbh
3-oxoacyl-ACP synthase rbh
04302015_16_scaffold_498_11
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10470..10709)
DNA (240bp) protein (80aa)
Acyl carrier protein n=18 Tax=Comamonadaceae RepID=ACP_ACIAC
acpP; acyl carrier protein; K02078 acyl carrier protein
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
04302015_16_scaffold_498_12
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10813..11559)
DNA (747bp) protein (249aa)
3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T2I6_ACIDE rbh
3-oxoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:EER61298.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
3-oxoacyl-(acyl-carrier-protein) reductase rbh
04302015_16_scaffold_498_13
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11556..12506)
DNA (951bp) protein (317aa)
Malonyl CoA-acyl carrier protein transacylase {ECO:0000256|PIRNR:PIRNR000446}; EC=2.3.1.39 {ECO:0000256|PIRNR:PIRNR000446};; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
Malonyl CoA-acyl carrier protein transacylase n=1 Tax=Acidovorax sp. NO-1 RepID=H0BV47_9BURK rbh
malonyl CoA-acyl carrier protein transacylase rbh
04302015_16_scaffold_498_14
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12565..13542)
DNA (978bp) protein (326aa)
3-oxoacyl-[acyl-carrier-protein] synthase 3 {ECO:0000256|HAMAP-Rule:MF_01815}; EC=2.3.1.180 {ECO:0000256|HAMAP-Rule:MF_01815};; 3-oxoacyl-[acyl-carrier-protein] synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; Beta-ketoacyl-ACP synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
3-oxoacyl-ACP synthase (EC:2.3.1.180) rbh
3-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T2I4_ACIDE rbh
04302015_16_scaffold_498_15
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13542..14594)
DNA (1053bp) protein (351aa)
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase {ECO:0000256|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" so
Phosphate acyltransferase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T2I3_ACIDE rbh
phosphate acyltransferase rbh
04302015_16_scaffold_498_16
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(14703..14885)
DNA (183bp) protein (61aa)
50S ribosomal protein L32 n=5 Tax=Acidovorax RepID=F0QCX4_ACIAP
rpmF; 50S ribosomal protein L32
Tax=GWA2_Burkholderiales_64_37_curated
04302015_16_scaffold_498_17
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14986..15537)
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T2I1_ACIDE rbh
Uncharacterized protein {ECO:0000313|EMBL:EER61293.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
hypothetical protein rbh
04302015_16_scaffold_498_18
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15563..16162
DNA (600bp) protein (200aa)
Maf-like protein AcdelDRAFT_1110 n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T2I0_ACIDE rbh
Maf-like protein AcdelDRAFT_1110 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
maf protein rbh
04302015_16_scaffold_498_19
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16159..16974
DNA (816bp) protein (272aa)
Uroporphyrin-III C/tetrapyrrole (Corrin/porphyrin) methyltransferase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T2H9_ACIDE rbh
Uroporphyrin-III C/tetrapyrrole (Corrin/porphyrin) methyltransferase {ECO:0000313|EMBL:EER61291.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
uroporphyrin-III C/tetrapyrrole methyltransferase rbh
04302015_16_scaffold_498_20
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17111..18169)
DNA (1059bp) protein (353aa)
Peptidase S49 n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T2H8_ACIDE rbh
Peptidase S49 {ECO:0000313|EMBL:EER61290.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
peptidase S49 rbh
04302015_16_scaffold_498_21
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18261..18638)
DNA (378bp) protein (126aa)
Rieske (2Fe-2S) domain protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T2H7_ACIDE
Rieske (2Fe-2S) domain protein {ECO:0000313|EMBL:EER61289.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
Rieske (2Fe-2S) domain-containing protein
04302015_16_scaffold_498_22
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18675..19346)
DNA (672bp) protein (224aa)
HAD family hydrolase n=1 Tax=Acidovorax radicis RepID=UPI0002376690 rbh
HAD-superfamily hydrolase, subfamily IA, variant 1 {ECO:0000313|EMBL:EER61288.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
HAD family hydrolase rbh
04302015_16_scaffold_498_23
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19354..20424)
DNA (1071bp) protein (357aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
RluA family pseudouridine synthase (EC:4.2.1.70); K06179 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] rbh
Pseudouridine synthase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T2H5_ACIDE rbh
04302015_16_scaffold_498_24
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20948..24091
DNA (3144bp) protein (1048aa)
Ribonuclease E n=1 Tax=Acidovorax sp. NO-1 RepID=H0BVG5_9BURK rbh
ribonuclease rbh
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
04302015_16_scaffold_498_25
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24328..25005
DNA (678bp) protein (226aa)
UPF0246 protein AcdelDRAFT_4820 (Fragment) n=1 Tax=Acidovorax delafieldii 2AN RepID=C5TD39_ACIDE rbh
Uncharacterized protein {ECO:0000313|EMBL:EER57608.1}; Flags: Fragment;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
hypothetical protein rbh
04302015_16_scaffold_498_26
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25014..25916
DNA (903bp) protein (301aa)
2OG-Fe(II) oxygenase n=1 Tax=Acidovorax radicis RepID=UPI000237668C rbh
2OG-Fe(II) oxygenase superfamily enzyme {ECO:0000313|EMBL:EJE54870.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
2OG-Fe(II) oxygenase rbh
04302015_16_scaffold_498_27
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25983..26828
DNA (846bp) protein (282aa)
NADPH-dependent 7-cyano-7-deazaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00817, ECO:0000256|SAAS:SAAS00037296}; EC=1.7.1.13 {ECO:0000256|HAMAP-Rule:MF_00817, ECO:0000256|SAAS:SAAS00001352};; 7-cyano-7-carbaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00817}; NADPH-dependent nitrile oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00817}; PreQ(0) reductase {ECO:0000256|HAMAP-Rule:MF_00817}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="
NADPH-dependent 7-cyano-7-deazaguanine reductase n=1 Tax=Acidovorax sp. NO-1 RepID=H0BVG8_9BURK rbh
queF; 7-cyano-7-deazaguanine reductase rbh
04302015_16_scaffold_498_28
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26844..27113)
DNA (270bp) protein (90aa)
hypothetical protein n=1 Tax=Acidovorax radicis RepID=UPI000237668A
Uncharacterized protein {ECO:0000313|EMBL:KJA10228.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
hypothetical protein
04302015_16_scaffold_498_29
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27217..27963)
DNA (747bp) protein (249aa)
Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MDS4_ACIET
Chemotaxis protein {ECO:0000313|EMBL:KJA10229.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
Pas/Pac sensor-containing methyl-accepting chemotaxis sensory transducer; K03776 aerotaxis receptor
04302015_16_scaffold_498_30
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28003..28782)
DNA (780bp) protein (260aa)
Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MDS4_ACIET rbh
Chemotaxis protein {ECO:0000313|EMBL:KJA10229.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
Pas/Pac sensor-containing methyl-accepting chemotaxis sensory transducer; K03776 aerotaxis receptor rbh
Displaying items 1-30 of 35 in total

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