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04302015_16_scaffold_357

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Displaying items 1-30 of 78 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_16_scaffold_357_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..251)
DNA (249bp) protein (83aa)
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C (EC:6.3.5.-); K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C id=1355124 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_357_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

305..1393
DNA (1089bp) protein (363aa)
rod shape-determining protein MreB n=1 Tax=Thiobacillus thioparus RepID=UPI0003655A13 rbh
rod shape-determining protein MreB; K03569 rod shape-determining protein MreB and related proteins rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_357_3
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1452..2303
DNA (852bp) protein (284aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003734A71
rod shape-determining protein MreC; K03570 rod shape-determining protein MreC
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_357_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2300..2797
DNA (498bp) protein (166aa)
Putative uncharacterized protein id=1355119 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein; K03571 rod shape-determining protein MreD
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_357_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2794..4686
DNA (1893bp) protein (631aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129); K05515 penicillin-binding protein 2
penicillin-binding protein 2 n=1 Tax=Thiobacillus denitrificans RepID=UPI000361CE6D rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_357_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4673..5770
DNA (1098bp) protein (366aa)
cell wall shape-determining protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036E4145
rod shape-determining protein RodA; K05837 rod shape determining protein RodA
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_357_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5788..6621
DNA (834bp) protein (278aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003687C9B
rare lipoprotein A; K03642 rare lipoprotein A
Tax=GWE1_Thiobacillus_62_9_curated
04302015_16_scaffold_357_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6629..7750
DNA (1122bp) protein (374aa)
serine-type D-ala-D-ala carboxypeptidase (EC:3.4.16.4); K01286 D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4]
Serine-type D-ala-D-ala carboxypeptidase id=1362418 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_357_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7750..8598
DNA (849bp) protein (283aa)
D-alanine transminase (EC:2.6.1.21); K00824 D-alanine transaminase [EC:2.6.1.21]
cytochrome C550 n=1 Tax=Thiobacillus denitrificans RepID=UPI000382CF4D
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_357_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8595..8876
DNA (282bp) protein (94aa)
hypothetical protein; K09158 hypothetical protein id=12494171 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein; K09158 hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_357_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8891..9517
DNA (627bp) protein (209aa)
lipoate-protein ligase B; K03801 lipoyl(octanoyl) transferase [EC:2.3.1.181]
lipoate-protein ligase B n=1 Tax=Thiobacillus denitrificans RepID=UPI00037EB0A9
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_357_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9567..10682
DNA (1116bp) protein (372aa)
anthranilate phosphoribosyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI000361F7BF
anthranilate phosphoribosyltransferase-like protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_357_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10682..10990
DNA (309bp) protein (103aa)
dioxygenase n=1 Tax=Thiobacillus thioparus RepID=UPI00037AE749
putative dioxygenase ferredoxin subunit; K05710 dioxygenase ferredoxin subunit
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
04302015_16_scaffold_357_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10991..11539)
DNA (549bp) protein (183aa)
Thioredoxin family protein id=1362410 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
thioredoxin family protein
Tax=GWE1_Thiobacillus_62_9_curated
04302015_16_scaffold_357_15
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11526..12086)
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037AF101
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ96226.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
04302015_16_scaffold_357_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12135..13061
DNA (927bp) protein (309aa)
lipoyl synthase; K03644 lipoic acid synthetase [EC:2.8.1.8]
lipoyl synthase n=1 Tax=Thiobacillus thioparus RepID=UPI0003619D89
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_357_17
unknown

Not on your lists

comp(13063..14196)
DNA (1134bp) protein (378aa)

This feature has no annotations

04302015_16_scaffold_357_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14592..15377)
DNA (786bp) protein (262aa)
ABC-2 type transporter, NodJ id=1316207 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
ABC-2 type transporter, NodJ; K09694 lipooligosaccharide transport system permease protein rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_357_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15370..16275)
DNA (906bp) protein (302aa)
ABC transporter ATP-binding protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003813636 rbh
ABC-2 type transporter ATPase; K09695 lipooligosaccharide transport system ATP-binding protein
Tax=GWE1_Thiobacillus_62_9_curated
04302015_16_scaffold_357_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16269..16871)
DNA (603bp) protein (201aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000361CAA0
hypothetical protein; K07018
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_357_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16882..17226)
DNA (345bp) protein (115aa)
ferredoxin n=1 Tax=Thiobacillus thioparus RepID=UPI00037D7A1A
putative ferredoxin 2fe-2s protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_357_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17192..17665)
DNA (474bp) protein (158aa)
hypothetical protein id=12494180 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_357_23
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17804..18430
DNA (627bp) protein (209aa)
sugar ABC transporter substrate-binding protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036B8071
polysaccharide export outer membrane protein; K01991 polysaccharide export outer membrane protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_357_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18487..20019
DNA (1533bp) protein (511aa)
chain-length determining protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037224E8 rbh
polysaccharide chain length determinant protein rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_357_25
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20028..20972
DNA (945bp) protein (315aa)
protein-tyrosine kinase n=1 Tax=Thiobacillus thioparus RepID=UPI0003650052
protein-tyrosine kinase rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_357_26
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20944..22542
DNA (1599bp) protein (533aa)
Putative uncharacterized protein id=1316215 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
hypothetical protein rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_357_27
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22625..23659
DNA (1035bp) protein (345aa)
ATPase id=1316216 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
ATPase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_357_28
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23718..24779
DNA (1062bp) protein (354aa)
UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14); K01791 UDP-N-acetylglucosamine 2-epimerase [EC:5.1.3.14]
UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Thiobacillus denitrificans RepID=UPI000373D4D9
Tax=GWE1_Thiobacillus_62_9_curated
04302015_16_scaffold_357_29
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24780..25622
DNA (843bp) protein (281aa)
Polysaccharide deacetylase id=1316218 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
polysaccharide deacetylase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_357_30
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25625..26701
DNA (1077bp) protein (359aa)
peptidoglycan bridge formation protein FemAB n=1 Tax=Thiobacillus thioparus RepID=UPI00037FC115
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying items 1-30 of 78 in total

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