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04302015_16_scaffold_373

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Displaying items 1-30 of 95 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_16_scaffold_373_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1780
DNA (1779bp) protein (593aa)
Elongation factor 4 {ECO:0000255|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000255|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000255|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000255|HAMAP-Rule:MF_00071}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
elongation factor 4 n=1 Tax=Thiobacillus thioparus RepID=UPI000375E13F
GTP-binding protein LepA; K03596 GTP-binding protein LepA
04302015_16_scaffold_373_2
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1786..2595
DNA (810bp) protein (270aa)
signal peptidase I (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89]
signal peptidase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003777F14
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_373_3
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2617..3018
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000376AB40
transmembrane protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_373_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3011..3691
DNA (681bp) protein (227aa)
rnc; ribonuclease III (EC:3.1.26.3); K03685 ribonuclease III [EC:3.1.26.3]
ribonuclease III n=1 Tax=Thiobacillus denitrificans RepID=UPI0003693419
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_373_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3688..4590
DNA (903bp) protein (301aa)
GTPase Era id=1343010 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
GTPase; K03595 GTP-binding protein Era
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_373_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4631..5368
DNA (738bp) protein (246aa)
DNA repair protein RecO n=1 Tax=Thiobacillus thioparus RepID=UPI000363ABBE
recO; DNA repair protein RecO; K03584 DNA repair protein RecO (recombination protein O)
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_373_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5372..6100
DNA (729bp) protein (243aa)
pyridoxine 5'-phosphate synthase; K03474 pyridoxine 5-phosphate synthase [EC:2.6.99.2]
Pyridoxine 5'-phosphate synthase id=1343008 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
04302015_16_scaffold_373_8
Methylophilaceae bacterium 11, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6365..6769
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Methylotenera sp. 1P/1 RepID=UPI000372714D
Uncharacterized protein {ECO:0000313|EMBL:EUJ10056.1}; Flags: Precursor;; TaxID=1101195 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae.;" source="Methylophilaceae bacterium 11.;"
hypothetical protein
04302015_16_scaffold_373_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6954..7550)
DNA (597bp) protein (199aa)
hypothetical protein id=12493435 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
putative membrane-associated protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_373_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7639..8571)
DNA (933bp) protein (311aa)
preprotein translocase subunit SecF n=1 Tax=Thiobacillus denitrificans RepID=UPI00036619AC
secF; preprotein translocase subunit SecF; K03074 preprotein translocase subunit SecF rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_373_11
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8581..10395)
DNA (1815bp) protein (605aa)
preprotein translocase subunit SecD n=1 Tax=Thiobacillus denitrificans RepID=UPI00035CB097 rbh
preprotein translocase protein SecD; K03072 preprotein translocase subunit SecD
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_373_12
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10470..10796)
DNA (327bp) protein (109aa)
Preprotein translocase protein YajC id=1343003 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
protein translocase subunit YajC; K03210 preprotein translocase subunit YajC
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_373_13
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10842..11945)
DNA (1104bp) protein (368aa)
queuine tRNA-ribosyltransferase (EC:2.4.2.29); K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29]
queuine tRNA-ribosyltransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI000373F84D rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_373_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11935..12963)
DNA (1029bp) protein (343aa)
queuosine biosynthesis protein; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-]
S-adenosylmethionine:tRNA ribosyltransferase-isomerase id=1343001 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_373_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13562..14224
DNA (663bp) protein (221aa)
glucokinase (EC:2.7.1.2); K00845 glucokinase [EC:2.7.1.2]
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036B9A57
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_373_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14202..14486
DNA (285bp) protein (95aa)
glucokinase (EC:2.7.1.2); K00845 glucokinase [EC:2.7.1.2]
Glucokinase id=1332710 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_373_17
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14553..15872
DNA (1320bp) protein (440aa)
glgC; glucose-1-phosphate adenylyltransferase (EC:2.7.7.27); K00975 glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
Glucose-1-phosphate adenylyltransferase id=1332709 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_373_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15856..17685
DNA (1830bp) protein (610aa)
Glycosyl hydrolase family 57 id=1332708 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
glycosyl hydrolase family protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_373_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17661..18908
DNA (1248bp) protein (416aa)
4-alpha-glucanotransferase (EC:2.4.1.25); K00705 4-alpha-glucanotransferase [EC:2.4.1.25]
4-alpha-glucanotransferase id=1332707 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_373_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18905..21115
DNA (2211bp) protein (737aa)
glycogen branching enzyme (EC:2.4.1.18); K00700 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
glycogen branching protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000362B920
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_373_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21174..22646
DNA (1473bp) protein (491aa)
glycogen/starch synthase, ADP-glucose type; K00703 starch synthase [EC:2.4.1.21] rbh
Glycogen synthase id=1332705 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_373_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22723..25155
DNA (2433bp) protein (811aa)
phosphorylase (EC:2.4.1.1); K00688 starch phosphorylase [EC:2.4.1.1]
glycogen phosphorylase n=1 Tax=Thiobacillus thioparus RepID=UPI000377E969
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_373_23
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25281..26528
DNA (1248bp) protein (416aa)
Dead/deah box helicase domain-containing protein id=1266337 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
DEAD/DEAH box helicase domain-containing protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_373_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26543..26923)
DNA (381bp) protein (127aa)
aspartate alpha-decarboxylase (EC:4.1.1.11); K01579 aspartate 1-decarboxylase [EC:4.1.1.11]
Aspartate 1-decarboxylase id=1340319 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_373_25
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26998..27843)
DNA (846bp) protein (282aa)
panC; pantoate--beta-alanine ligase (EC:6.3.2.1); K01918 pantoate--beta-alanine ligase [EC:6.3.2.1]
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037F7561
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_373_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27843..28637)
DNA (795bp) protein (265aa)
ketopantoate hydroxymethyltransferase (EC:2.1.2.11); K00606 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
3-methyl-2-oxobutanoate hydroxymethyltransferase id=1340316 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
Tax=GWE1_Thiobacillus_62_9_curated
04302015_16_scaffold_373_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28634..29275)
DNA (642bp) protein (214aa)
deoxyadenosine kinase n=1 Tax=Thiobacillus thioparus RepID=UPI00036D27D8
deoxynucleoside kinase
Tax=GWE1_Thiobacillus_62_9_curated
04302015_16_scaffold_373_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29272..29778)
DNA (507bp) protein (169aa)
7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (EC:2.7.6.3); K00950 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase n=1 Tax=Thiobacillus thioparus RepID=UPI00036297F7
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_373_29
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29775..31130)
DNA (1356bp) protein (452aa)
poly(A) polymerase, PcnB; K00970 poly(A) polymerase [EC:2.7.7.19]
poly(A) polymerase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037262B6
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_373_30
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31182..31916)
DNA (735bp) protein (245aa)
putative Fe3+-siderophores transport system ATPase; K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34]
Putative Fe3+-siderophores transport system ATPase id=1340312 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying items 1-30 of 95 in total

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