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04302015_16_scaffold_641

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Displaying items 1-30 of 31 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_16_scaffold_641_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1657
DNA (1656bp) protein (552aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036AE8D2 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AAZ97700.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
04302015_16_scaffold_641_2
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1666..4782
DNA (3117bp) protein (1039aa)
multidrug transporter AcrB n=1 Tax=Thiobacillus thioparus RepID=UPI000370C32B rbh
Heavy metal efflux pump CzcA {ECO:0000313|EMBL:AAZ97699.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
heavy metal efflux pump CzcA; K07239 heavy-metal exporter, HME family rbh
04302015_16_scaffold_641_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4826..5263
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000360B240
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97698.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
04302015_16_scaffold_641_4
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5550..5720)
DNA (171bp) protein (57aa)
transcriptional regulator n=1 Tax=Thiobacillus thioparus RepID=UPI00037656E9
two component heavy metal response transcriptional regulator
Tax=GWE1_Thiobacillus_62_9_curated
04302015_16_scaffold_641_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5891..7747
DNA (1857bp) protein (619aa)
Multi-Cu(II) oxidase CopA id=1351588 bin=GWE1_T_denit_62_9 species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
copper-resistance protein, CopA family protein
Tax=GWE1_Thiobacillus_62_9_curated
04302015_16_scaffold_641_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7777..8856
DNA (1080bp) protein (360aa)
copper resistance protein B id=12497697 bin=THIO_MID species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
copper resistance protein B rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_641_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8918..9424
DNA (507bp) protein (169aa)
blue (type1) copper domain-containing protein id=12497696 bin=THIO_MID species=Caldimonas manganoxidans genus=Caldimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
blue (type1) copper domain-containing protein
Tax=GWE1_Thiobacillus_62_9_curated
04302015_16_scaffold_641_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9604..9942
DNA (339bp) protein (113aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036ED810
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_641_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9974..10441
DNA (468bp) protein (156aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003725B88
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_641_10
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10550..10792
DNA (243bp) protein (81aa)
heavy metal translocating P-type ATPase; K01533 Cu2+-exporting ATPase [EC:3.6.3.4] id=12498619 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
heavy metal translocating P-type ATPase; K01533 Cu2+-exporting ATPase [EC:3.6.3.4]
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:AAZ98693.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
04302015_16_scaffold_641_11
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10762..10941
DNA (180bp) protein (60aa)
heavy metal translocating P-type ATPase; K01533 Cu2+-exporting ATPase [EC:3.6.3.4]
ATPase n=1 Tax=Thiobacillus thioparus RepID=UPI00037EA9F4
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:AAZ98693.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
04302015_16_scaffold_641_12
unknown

Not on your lists

comp(11030..11284)
DNA (255bp) protein (85aa)

This feature has no annotations

04302015_16_scaffold_641_13
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11343..12137
DNA (795bp) protein (265aa)
heavy metal translocating P-type ATPase; K01533 Cu2+-exporting ATPase [EC:3.6.3.4]
ATPase n=1 Tax=Thiobacillus thioparus RepID=UPI00037EA9F4
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:AAZ98693.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
04302015_16_scaffold_641_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12510..13322)
DNA (813bp) protein (271aa)
Putative uncharacterized protein n=1 Tax=Nitrosomonas sp. AL212 RepID=F9ZI51_9PROT
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_641_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13345..13746)
DNA (402bp) protein (134aa)
Biopolymer transport protein ExbD/TolR n=1 Tax=Nitrosospira sp. APG3 RepID=M5DEZ5_9PROT
biopolymer transport protein ExbD/TolR; K03559 biopolymer transport protein ExbD
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_641_16
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13733..14380)
DNA (648bp) protein (216aa)
Outer membrane transport energization protein ExbB n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y6N0_NITMU rbh
MotA/TolQ/ExbB proton channel; K03561 biopolymer transport protein ExbB rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_641_17
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14578..15780)
DNA (1203bp) protein (401aa)
tryptophanyl-tRNA synthetase (EC:6.1.1.2); K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2]
tryptophanyl-tRNA synthetase n=1 Tax=Thiobacillus thioparus RepID=UPI0003757139
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_641_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15821..16525)
DNA (705bp) protein (235aa)
Putative integral membrane transmembrane protein id=1348881 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
putative integral membrane transmembrane protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_641_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16535..17008)
DNA (474bp) protein (158aa)
translation factor Sua5 n=1 Tax=Thiobacillus thioparus RepID=UPI0003710430
putative translation factor Sua5; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_641_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16957..17883)
DNA (927bp) protein (309aa)
Phosphoesterase PHP id=1348883 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
phosphoesterase PHP; K07053
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_641_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18014..18655
DNA (642bp) protein (214aa)
Probable intracellular septation protein A id=1348884 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
intracellular septation protein A; K06190 intracellular septation protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_641_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18655..18957
DNA (303bp) protein (101aa)
hypothetical protein; K09780 hypothetical protein id=12497610 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_641_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18954..19217
DNA (264bp) protein (88aa)
Putative stress-induced morphogen BolA id=1348886 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
putative stress-induced morphogen BolA; K05527 BolA protein
Tax=GWE1_Thiobacillus_62_9_curated
04302015_16_scaffold_641_24
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19229..20041
DNA (813bp) protein (271aa)
PpiC-type peptidyl-prolyl cis-trans isomerase id=12493080 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
PpiC-type peptidyl-prolyl cis-trans isomerase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_641_25
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20097..20342
DNA (246bp) protein (82aa)
RNA-binding protein Hfq n=1 Tax=Thiobacillus RepID=UPI00037A4DDE
RNA-binding protein Hfq; K03666 host factor-I protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_641_26
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20353..21957)
DNA (1605bp) protein (535aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000361616F
putative glycosyltransferase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_641_27
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21935..22654)
DNA (720bp) protein (240aa)
Membrane protein, putative id=1348030 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_641_28
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22656..23405)
DNA (750bp) protein (250aa)
group 2 family glycosyl transferase; K00721 dolichol-phosphate mannosyltransferase [EC:2.4.1.83] rbh
Glycosyltransferase, group 2 family protein id=1348029 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_641_29
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23746..24606)
DNA (861bp) protein (287aa)
VacJ-like lipoprotein; K04754 lipoprotein id=12495579 bin=THIO_HI species=unknown genus=unknown taxon_order=unknown taxon_class=Zetaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Membrane protein {ECO:0000313|EMBL:KIO49758.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
VacJ-like lipoprotein; K04754 lipoprotein
04302015_16_scaffold_641_30
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25141..25668
DNA (528bp) protein (176aa)
molecular chaperone GrpE n=1 Tax=Thiobacillus thioparus RepID=UPI00036A8592
molecular chaperone protein GrpE; K03687 molecular chaperone GrpE
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying items 1-30 of 31 in total

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