ggKbase home page

04302015_16_scaffold_263

Search features with annotation key words

Displaying items 1-30 of 35 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_16_scaffold_263_1
Cyclobacterium qasimii, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(9..911)
DNA (903bp) protein (301aa)
Transposase n=1 Tax=Cyclobacterium qasimii M12-11B RepID=S7WPK8_9BACT rbh
Transposase {ECO:0000313|EMBL:EPR68669.1}; TaxID=641524 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium qasimii M12-11B.;"
hypothetical protein rbh
04302015_16_scaffold_263_2
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1308..2690)
DNA (1383bp) protein (461aa)
Orn/DAP/Arg decarboxylase 2, C-terminal protein; K01585 arginine decarboxylase [EC:4.1.1.19] rbh
Arginine decarboxylase {ECO:0000256|SAAS:SAAS00212226}; EC=4.1.1.19 {ECO:0000256|SAAS:SAAS00212226};; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
Orn/DAP/Arg decarboxylase 2, C-terminal protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C3U0_SPHS2 rbh
04302015_16_scaffold_263_3
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2800..3747
DNA (948bp) protein (316aa)
Arginase {ECO:0000256|RuleBase:RU361159}; EC=3.5.3.1 {ECO:0000256|RuleBase:RU361159};; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
Arginase/agmatinase/formiminoglutamase; K01476 arginase [EC:3.5.3.1] rbh
Arginase/agmatinase/formiminoglutamase n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XYP1_PEDHD rbh
04302015_16_scaffold_263_4
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


3774..5552
DNA (1779bp) protein (593aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
arginyl-tRNA synthetase; K01887 arginyl-tRNA synthetase [EC:6.1.1.19] rbh
Arginine--tRNA ligase n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2G508_9SPHI rbh
04302015_16_scaffold_263_5
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5781..6638)
DNA (858bp) protein (286aa)
Contig174, whole genome shotgun sequence {ECO:0000313|EMBL:KIO74524.1}; EC=1.1.1.157 {ECO:0000313|EMBL:KIO74524.1};; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.157); K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] rbh
3-hydroxybutyryl-CoA dehydrogenase n=1 Tax=Pedobacter sp. BAL39 RepID=A6E845_9SPHI rbh
04302015_16_scaffold_263_6
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7064..10042
DNA (2979bp) protein (993aa)
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI0003640E9C rbh
TonB-dependent receptor plug rbh
TonB-dependent receptor plug {ECO:0000313|EMBL:AEE52637.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
04302015_16_scaffold_263_7
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10054..11457
DNA (1404bp) protein (468aa)
RagB/SusD domain-containing protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KXX7_HALH1 rbh
RagB/SusD domain-containing protein rbh
RagB/SusD domain-containing protein {ECO:0000313|EMBL:AEE52636.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
04302015_16_scaffold_263_8
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11554..12165)
DNA (612bp) protein (204aa)
ATP-dependent dethiobiotin synthetase BioD {ECO:0000256|HAMAP-Rule:MF_00336}; EC=6.3.3.3 {ECO:0000256|HAMAP-Rule:MF_00336};; DTB synthetase {ECO:0000256|HAMAP-Rule:MF_00336}; Dethiobiotin synthase {ECO:0000256|HAMAP-Rule:MF_00336}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
ATP-dependent dethiobiotin synthetase BioD n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y9J9_9SPHI
dethiobiotin synthase
04302015_16_scaffold_263_9
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12162..13283)
DNA (1122bp) protein (374aa)
8-amino-7-oxononanoate synthase {ECO:0000313|EMBL:KHJ36843.1}; EC=2.3.1.47 {ECO:0000313|EMBL:KHJ36843.1};; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;"
Aminotransferase class I and II n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y9K0_9SPHI rbh
7-keto-8-aminopelargonate synthetase-like enzyme rbh
04302015_16_scaffold_263_10
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13356..13799)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GT27_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EOR94871.1}; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
hypothetical protein
04302015_16_scaffold_263_11
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13873..14649)
DNA (777bp) protein (259aa)
transcriptional regulator n=1 Tax=Cytophagales str. B6 RepID=UPI0003B305CF rbh
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EEI92887.1}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
helix-turn-helix domain-containing protein rbh
04302015_16_scaffold_263_12
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14744..15118
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Pedobacter agri RepID=UPI00029AAC1D
Contig83, whole genome shotgun sequence {ECO:0000313|EMBL:KIO75774.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
hypothetical protein
04302015_16_scaffold_263_13
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15119..15616)
DNA (498bp) protein (166aa)
Peptide methionine sulfoxide reductase MsrB {ECO:0000313|EMBL:KHJ36848.1}; EC=1.8.4.12 {ECO:0000313|EMBL:KHJ36848.1};; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;"
Methionine-R-sulfoxide reductase n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y9K4_9SPHI
methionine-R-sulfoxide reductase
04302015_16_scaffold_263_14
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15747..18866)
DNA (3120bp) protein (1040aa)
WD40-like beta Propeller containing protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C207_SPHS2 rbh
WD40-like beta Propeller containing protein {ECO:0000313|EMBL:ADZ79657.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
hypothetical protein rbh
04302015_16_scaffold_263_15
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18958..21426)
DNA (2469bp) protein (823aa)
glycosyl transferase family protein; K05366 penicillin-binding protein 1A [EC:2.4.1.- 3.4.-.-] rbh
Bifunctional family GT51 b-glycosyltransferase/PBP transpeptidase, candidate murein polymerase, glycosyltransferase family protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6E865_9SPHI rbh
Bifunctional family GT51 b-glycosyltransferase/PBP transpeptidase, candidate murein polymerase, glycosyltransferase family protein {ECO:0000313|EMBL:EDM38195.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
04302015_16_scaffold_263_16
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21545..22426
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Pedobacter agri RepID=UPI00029A8950 rbh
Polyphosphate:nucleotide phosphotransferase {ECO:0000313|EMBL:KIA96434.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
hypothetical protein rbh
04302015_16_scaffold_263_17
Joostella marina, Joostella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22439..22735)
DNA (297bp) protein (99aa)
Putative acetyltransferase n=1 Tax=Joostella marina DSM 19592 RepID=I3C5J7_9FLAO
Putative acetyltransferase {ECO:0000313|EMBL:EIJ38890.1}; TaxID=926559 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Joostella.;" source="Joostella marina DSM 19592.;"
hypothetical protein; K06975
04302015_16_scaffold_263_18
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22781..23563)
DNA (783bp) protein (261aa)
Omega amidase n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GVI8_9SPHI rbh
Omega amidase {ECO:0000313|EMBL:EOR95658.1}; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; K08590 carbon-nitrogen hydrolase family protein rbh
04302015_16_scaffold_263_19
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23605..24747)
DNA (1143bp) protein (381aa)
class I and II aminotransferase; K14287 methionine aminotransferase [EC:2.6.1.-] rbh
Aminotransferase class I and II n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y1A4_9SPHI rbh
Aminotransferase class I and II {ECO:0000313|EMBL:EHQ30238.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
04302015_16_scaffold_263_20
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24847..25617
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6E8G4_9SPHI rbh
Uncharacterized protein {ECO:0000313|EMBL:EDM38294.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
hypothetical protein; K09125 hypothetical protein rbh
04302015_16_scaffold_263_21
GWA2_Bacteroidetes_40_15_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25679..26794
DNA (1116bp) protein (372aa)
YtaP id=3921952 bin=GWF2_Bacteroidetes_41_9 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Bacteroidetes_41_9 organism_group=Bacteroidetes rbh
Dienelactone hydrolase and related enzymes
Tax=GWA2_Bacteroidetes_40_15_curated
04302015_16_scaffold_263_22
Cyclobacteriaceae bacterium AK24, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

26798..27946
DNA (1149bp) protein (383aa)
Sialidase {ECO:0000313|EMBL:EON77291.1}; EC=3.2.1.18 {ECO:0000313|EMBL:EON77291.1};; TaxID=1288963 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; unclassified Cyclobacteriaceae.;" source="Cyclobacteriaceae bacterium AK24.;"
Sialidase n=1 Tax=Cyclobacteriaceae bacterium AK24 RepID=R7ZT14_9BACT rbh
hypothetical protein rbh
04302015_16_scaffold_263_23
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(28175..28858)
DNA (684bp) protein (228aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;"
peptidyl-prolyl isomerase (EC:5.2.1.8); K03773 FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]
peptidylprolyl isomerase n=1 Tax=Pedobacter agri RepID=UPI00029AD100
04302015_16_scaffold_263_24
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

29109..30323
DNA (1215bp) protein (405aa)
sterol desaturase n=1 Tax=Pedobacter agri RepID=UPI00029B2B42 rbh
Sterol desaturase {ECO:0000313|EMBL:ETZ22452.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
sterol desaturase rbh
04302015_16_scaffold_263_25
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

30316..31023
DNA (708bp) protein (236aa)
YhhN family protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XXX9_PEDHD
Uncharacterized protein {ECO:0000313|EMBL:ETZ22453.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
hypothetical protein
04302015_16_scaffold_263_26
Flammeovirgaceae bacterium 311, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

31131..31886
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Cesiribacter andamanensis AMV16 RepID=M7MYE7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AHM61510.1}; TaxID=1257021 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; unclassified Flammeovirgaceae.;" source="Flammeovirgaceae bacterium 311.;"
hypothetical protein
04302015_16_scaffold_263_27
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

31883..34666
DNA (2784bp) protein (928aa)
TonB-dependent receptor n=1 Tax=Cytophagales str. B6 RepID=UPI0003B67F1D rbh
TonB-dependent receptor {ECO:0000313|EMBL:EOR96547.1}; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
TonB-dependent receptor plug rbh
04302015_16_scaffold_263_28
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

34668..35813
DNA (1146bp) protein (382aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NSK1_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17814.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
04302015_16_scaffold_263_29
Pontibacter korlensis, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

35839..38259
DNA (2421bp) protein (807aa)
hypothetical protein n=1 Tax=Cytophagales str. B6 RepID=UPI0003B4D63F rbh
Uncharacterized protein {ECO:0000313|EMBL:AKD05653.1}; TaxID=400092 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter korlensis.;"
hypothetical protein rbh
04302015_16_scaffold_263_30
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

38959..41535
DNA (2577bp) protein (859aa)
N-acetyl-beta-hexosaminidase n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KM38_SOLCM rbh
N-acetyl-beta-hexosaminidase rbh
N-acetyl-beta-hexosaminidase {ECO:0000313|EMBL:AFD08960.1}; Flags: Precursor;; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
Displaying items 1-30 of 35 in total

View Taxonomy