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04302015_16_scaffold_478

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Displaying items 1-30 of 33 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_16_scaffold_478_1
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(245..889)
DNA (645bp) protein (215aa)
50S ribosomal protein L17 n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YF82_9SPHI
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
50S ribosomal protein L17; K02879 large subunit ribosomal protein L17
04302015_16_scaffold_478_2
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(963..1955)
DNA (993bp) protein (331aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;"
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] rbh
DNA-directed RNA polymerase subunit alpha n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0SB38_PEDSD rbh
04302015_16_scaffold_478_3
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(2057..2665)
DNA (609bp) protein (203aa)
30S ribosomal protein S4 n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GW98_9SPHI rbh
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 rbh
04302015_16_scaffold_478_4
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(2744..3175)
DNA (432bp) protein (144aa)
30S ribosomal protein S11 n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GNU9_9SPHI
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11
04302015_16_scaffold_478_5
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(3317..3694)
DNA (378bp) protein (126aa)
30S ribosomal protein S13 n=1 Tax=Cytophagales str. B6 RepID=UPI0003B63262
30S ribosomal protein S13; K02952 small subunit ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
04302015_16_scaffold_478_6
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3910..4128)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=2 Tax=Pedobacter RepID=C6Y0T5_PEDHD
translation initiation factor IF-1; K02518 translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
04302015_16_scaffold_478_7
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4282..5067)
DNA (786bp) protein (262aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;"
methionine aminopeptidase (EC:3.4.11.18); K01265 methionyl aminopeptidase [EC:3.4.11.18] rbh
methionine aminopeptidase n=1 Tax=Cytophagales str. B6 RepID=UPI0003B4F593 rbh
04302015_16_scaffold_478_8
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(5073..6401)
DNA (1329bp) protein (443aa)
Protein translocase subunit SecY n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0SB45_PEDSD rbh
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;"
protein translocase subunit secY/sec61 alpha; K03076 preprotein translocase subunit SecY rbh
04302015_16_scaffold_478_9
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(6408..6854)
DNA (447bp) protein (149aa)
50S ribosomal protein L15 n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHP5_9SPHI
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
50S ribosomal protein L15; K02876 large subunit ribosomal protein L15
04302015_16_scaffold_478_10
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(6857..7036)
DNA (180bp) protein (60aa)
50S ribosomal protein L30 n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GMZ7_9SPHI
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00032272}; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
50S ribosomal protein L30; K02907 large subunit ribosomal protein L30
04302015_16_scaffold_478_11
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(7042..7560)
DNA (519bp) protein (173aa)
30S ribosomal protein S5 n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YF93_9SPHI rbh
rpsE; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 rbh
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
04302015_16_scaffold_478_12
Sphingobacterium paucimobilis, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(7616..7969)
DNA (354bp) protein (118aa)
50S ribosomal protein L18 n=1 Tax=Sphingobacterium paucimobilis HER1398 RepID=U2J0Q9_9SPHI
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1346330 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium paucimobilis HER1398.;"
50S ribosomal protein L18; K02881 large subunit ribosomal protein L18
04302015_16_scaffold_478_13
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(7975..8532)
DNA (558bp) protein (186aa)
50S ribosomal protein L6 n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y0S8_PEDHD rbh
50S ribosomal protein L6; K02933 large subunit ribosomal protein L6 rbh
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
04302015_16_scaffold_478_14
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(8547..8945)
DNA (399bp) protein (133aa)
30S ribosomal protein S8 n=1 Tax=Pedobacter agri RepID=UPI00029A62FF
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
30S ribosomal protein S8; K02994 small subunit ribosomal protein S8
04302015_16_scaffold_478_15
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(9127..9396)
DNA (270bp) protein (90aa)
30S ribosomal protein S14 n=1 Tax=Pedobacter arcticus RepID=UPI0002F3A107
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
30S ribosomal protein S14; K02954 small subunit ribosomal protein S14
04302015_16_scaffold_478_16
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(9396..9962)
DNA (567bp) protein (189aa)
50S ribosomal protein L5 n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C6X3_SPHS2 rbh
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 rbh
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333, ECO:0000256|RuleBase:RU003931}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
04302015_16_scaffold_478_17
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(9962..10303)
DNA (342bp) protein (114aa)
50S ribosomal protein L24 n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GWB0_9SPHI
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
50S ribosomal protein L24; K02895 large subunit ribosomal protein L24
04302015_16_scaffold_478_18
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(10305..10673)
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=2 Tax=Pedobacter RepID=C6Y0S3_PEDHD
50S ribosomal protein L14; K02874 large subunit ribosomal protein L14
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
04302015_16_scaffold_478_19
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(10675..10929)
DNA (255bp) protein (85aa)
30S ribosomal protein S17 n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YFA1_9SPHI
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
30S ribosomal protein S17; K02961 small subunit ribosomal protein S17
04302015_16_scaffold_478_20
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(10943..11170)
DNA (228bp) protein (76aa)
50S ribosomal protein L29 n=1 Tax=Cytophagales str. B6 RepID=UPI0003B49332
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29
04302015_16_scaffold_478_21
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(11270..11692)
DNA (423bp) protein (141aa)
50S ribosomal protein L16 n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GNB8_9SPHI
50S ribosomal protein L16; K02878 large subunit ribosomal protein L16
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
04302015_16_scaffold_478_22
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(11731..12633)
DNA (903bp) protein (301aa)
30S ribosomal protein S3 n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GWB2_9SPHI rbh
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 rbh
04302015_16_scaffold_478_23
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(12640..13002)
DNA (363bp) protein (121aa)
50S ribosomal protein L22 n=1 Tax=Pedobacter arcticus RepID=UPI0002FB18DA
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;"
50S ribosomal protein L22; K02890 large subunit ribosomal protein L22
04302015_16_scaffold_478_24
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(13006..13272)
DNA (267bp) protein (89aa)
30S ribosomal protein S19 n=1 Tax=Pedobacter arcticus RepID=UPI00031E44A4
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;"
30S ribosomal protein S19; K02965 small subunit ribosomal protein S19
04302015_16_scaffold_478_25
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(13272..14096)
DNA (825bp) protein (275aa)
50S ribosomal protein L2 n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C6W3_SPHS2 rbh
50S ribosomal protein L2; K02886 large subunit ribosomal protein L2 rbh
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
04302015_16_scaffold_478_26
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(14104..14394)
DNA (291bp) protein (97aa)
50S ribosomal protein L23 n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y0R5_PEDHD
50S ribosomal protein L25; K02892 large subunit ribosomal protein L23
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
04302015_16_scaffold_478_27
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(14396..15025)
DNA (630bp) protein (210aa)
50S ribosomal protein L4 n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C6W1_SPHS2 rbh
50S ribosomal protein L4; K02926 large subunit ribosomal protein L4 rbh
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
04302015_16_scaffold_478_28
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(15030..15617)
DNA (588bp) protein (196aa)
50S ribosomal protein L3 n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C6W0_SPHS2 rbh
50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 rbh
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
04302015_16_scaffold_478_29
RBG_13_Bacteroidetes_42_15_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16711..17016
DNA (306bp) protein (102aa)
Tax=RBG_13_Bacteroidetes_42_15_curated
04302015_16_scaffold_478_30
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17417..17974
DNA (558bp) protein (186aa)
Putative uncharacterized protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y0R0_PEDHD
Uncharacterized protein {ECO:0000313|EMBL:KHJ37226.1}; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;"
hypothetical protein
Displaying items 1-30 of 33 in total

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