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04302015_16_scaffold_125

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Displaying items 1-30 of 71 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_16_scaffold_125_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1104)
DNA (1104bp) protein (368aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037398D4
chemotaxis sensory transducer
Chemotaxis sensory transducer {ECO:0000313|EMBL:AAZ96613.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
04302015_16_scaffold_125_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1409..2077)
DNA (669bp) protein (223aa)
ribosomal large subunit pseudouridine synthase A (EC:5.4.99.-); K06177 tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
Pseudouridine synthase id=1326793 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
Tax=GWE1_Thiobacillus_62_9_curated
04302015_16_scaffold_125_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2085..3572)
DNA (1488bp) protein (496aa)
leucyl aminopeptidase (EC:3.4.11.1); K01255 leucyl aminopeptidase [EC:3.4.11.1] rbh
Leucyl aminopeptidase id=1326794 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
Tax=GWE1_Thiobacillus_62_9_curated
04302015_16_scaffold_125_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3687..4688
DNA (1002bp) protein (334aa)
dehydrogenase complex, E1 component subunit alpha; K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] id=12494005 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
dehydrogenase complex, E1 component subunit alpha; K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_125_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4698..5681
DNA (984bp) protein (328aa)
pyruvate dehydrogenase E1 subunit beta; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] rbh
pyruvate dehydrogenase subunit beta n=1 Tax=Thiobacillus thioparus RepID=UPI0003720846 rbh
Tax=GWE1_Thiobacillus_62_9_curated
04302015_16_scaffold_125_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5774..8794
DNA (3021bp) protein (1007aa)
dihydrolipoamide dehydrogenase (EC:1.8.1.4); K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4] rbh
pyruvate dehydrogenase n=1 Tax=Thiobacillus denitrificans RepID=UPI00035D2158 rbh
Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase E3 component {ECO:0000313|EMBL:AAZ96605.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
04302015_16_scaffold_125_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9077..9742
DNA (666bp) protein (222aa)
OmpA/MotB domain containing protein id=12494700 bin=THIO_HI species=Pseudogulbenkiania ferrooxidans genus=Pseudogulbenkiania taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
OmpA/MotB domain containing protein rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_125_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9943..11370)
DNA (1428bp) protein (476aa)
Uncharacterized protein involved in outer membrane biogenesis-like id=1360589 bin=GWE1_T_denit_62_9 species=delta proteobacterium MLMS-1 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
04302015_16_scaffold_125_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11546..12709)
DNA (1164bp) protein (388aa)
serine-type D-ala-D-ala-carboxypeptidase (EC:3.4.16.4); K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] rbh
Serine-type D-ala-D-ala-carboxypeptidase id=1360588 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
Tax=GWE1_Thiobacillus_62_9_curated
04302015_16_scaffold_125_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12870..14183
DNA (1314bp) protein (438aa)
Na+/H+-glutamate/aspartate symport protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SL20_THIDA rbh
Na+/H+ - glutamate/aspartate symport protein; K03309 dicarboxylate/amino acid:cation (Na+ or H+) symporter, DAACS family rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_125_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14187..15197
DNA (1011bp) protein (337aa)
dihydroorotate dehydrogenase 2 (EC:1.3.3.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] rbh
Dihydroorotate dehydrogenase (quinone) id=1367850 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
Tax=GWE1_Thiobacillus_62_9_curated
04302015_16_scaffold_125_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15281..16366
DNA (1086bp) protein (362aa)
L-alanine dehydrogenase (EC:1.4.1.1); K00259 alanine dehydrogenase [EC:1.4.1.1] rbh
alanine dehydrogenase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003728711 rbh
Tax=GWE1_Thiobacillus_62_9_curated
04302015_16_scaffold_125_13
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16518..17246)
DNA (729bp) protein (243aa)
gpmA; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC:5.4.2.1); K01834 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.1]
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000365A9AE rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
04302015_16_scaffold_125_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17243..17896)
DNA (654bp) protein (218aa)
Phosphoglycerate mutase 2 id=1367854 bin=GWE1_T_denit_62_9 species=Aromatoleum aromaticum genus=Aromatoleum taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
gpmB; phosphoglycerate mutase 2
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_125_15
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18115..19536
DNA (1422bp) protein (474aa)
cytochrome c oxidase cbb3-type subunit I; K00404 cytochrome c oxidase cbb3-type subunit I [EC:1.9.3.1] id=12498099 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
cytochrome c oxidase cbb3-type subunit I; K00404 cytochrome c oxidase cbb3-type subunit I [EC:1.9.3.1] rbh
Cytochrome c oxidase cbb3-type, subunit I {ECO:0000313|EMBL:AAZ96596.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
04302015_16_scaffold_125_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19548..20153
DNA (606bp) protein (202aa)
Cytochrome C oxidase, mono-heme subunit/FixO id=1337112 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
cytochrome c oxidase, mono-heme subunit/FixO; K00405 cytochrome c oxidase cbb3-type subunit II
Tax=GWE1_Thiobacillus_62_9_curated
04302015_16_scaffold_125_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20161..20358
DNA (198bp) protein (66aa)
Cytochrome c oxidase, subunit CcoQ id=1337111 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
cytochrome c oxidase subunit CcoQ; K00407 cytochrome c oxidase cbb3-type subunit IV
Tax=GWE1_Thiobacillus_62_9_curated
04302015_16_scaffold_125_18
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20355..21275
DNA (921bp) protein (307aa)
cytochrome CBB3 n=1 Tax=Thiobacillus denitrificans RepID=UPI00036DAFDF rbh
cytochrome c oxidase cbb3-type subunit III; K00406 cytochrome c oxidase cbb3-type subunit III rbh
Cbb3-type cytochrome c oxidase subunit {ECO:0000256|PIRNR:PIRNR000006}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
04302015_16_scaffold_125_19
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21380..22798
DNA (1419bp) protein (473aa)
Probable iron-sulfur 4Fe-4S ferredoxin transmembrane protein id=1337109 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
iron-sulfur 4Fe-4S ferredoxin transmembrane protein rbh
Tax=GWE1_Thiobacillus_62_9_curated
04302015_16_scaffold_125_20
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22818..23354
DNA (537bp) protein (179aa)
Putative uncharacterized protein id=1337108 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein; K09926 hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
04302015_16_scaffold_125_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23356..23490
DNA (135bp) protein (45aa)
hypothetical protein id=1337107 bin=GWE1_T_denit_62_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
04302015_16_scaffold_125_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23516..23815
DNA (300bp) protein (100aa)
Putative uncharacterized protein id=1337106 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
04302015_16_scaffold_125_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23826..25196)
DNA (1371bp) protein (457aa)
coproporphyrinogen III oxidase (EC:1.3.99.22); K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22] rbh
coproporphyrinogen III oxidase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037693B3 rbh
Tax=GWE1_Thiobacillus_62_9_curated
04302015_16_scaffold_125_24
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25345..26154
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000362313F rbh
hypothetical protein rbh
Tax=GWE1_Thiobacillus_62_9_curated
04302015_16_scaffold_125_25
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26151..27593
DNA (1443bp) protein (481aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003701C11 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AAZ96586.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
04302015_16_scaffold_125_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27612..29894
DNA (2283bp) protein (761aa)
Exporter of the RND superfamily id=1346001 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
RND efflux transporter; K07003 rbh
Tax=GWE1_Thiobacillus_62_9_curated
04302015_16_scaffold_125_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29881..30444)
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037EB958
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
04302015_16_scaffold_125_28
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30459..33278)
DNA (2820bp) protein (940aa)
phosphoenolpyruvate carboxylase (EC:4.1.1.31); K01595 phosphoenolpyruvate carboxylase [EC:4.1.1.31] rbh
Phosphoenolpyruvate carboxylase id=1345999 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb rbh
Tax=GWE1_Thiobacillus_62_9_curated
04302015_16_scaffold_125_29
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33349..37302)
DNA (3954bp) protein (1318aa)
phosphoribosylformylglycinamidine synthase (EC:6.3.5.3); K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] rbh
phosphoribosylformylglycinamidine synthase n=1 Tax=Thiobacillus thioparus RepID=UPI0003757261 rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
04302015_16_scaffold_125_30
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37330..37572)
DNA (243bp) protein (81aa)
Putative uncharacterized protein id=1337189 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
Displaying items 1-30 of 71 in total

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