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04302015_16_scaffold_1

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Displaying items 1-30 of 519 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_16_scaffold_1_1
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..533
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P3N6_AZOS1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI74775.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
04302015_16_scaffold_1_2
Trichodesmium erythraeum, Trichodesmium, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

491..8737
DNA (8247bp) protein (2749aa)
RTX toxins and related Ca2+-binding protein n=1 Tax=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) RepID=Q21FF1_SACD2 rbh
hemolysin-type calcium-binding protein rbh
Hemolysin-type calcium-binding region {ECO:0000313|EMBL:ABG52560.1}; TaxID=203124 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Trichodesmium.;" source="Trichodesmium erythraeum (strain IMS101).;"
04302015_16_scaffold_1_3
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8819..10726)
DNA (1908bp) protein (636aa)
Diguanylate cyclase/phosphodiesterase with extracellular sensor n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RPI2_ACCPU rbh
diguanylate cyclase/phosphodiesterase with extracellular sensor rbh
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
04302015_16_scaffold_1_4
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10774..11352)
DNA (579bp) protein (193aa)
Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YDA7_9BURK
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
04302015_16_scaffold_1_5
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11762..14005
DNA (2244bp) protein (748aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium JGI 0001004-K23 RepID=UPI000361D41F rbh
TolC family type I secretion outer membrane protein; K12543 outer membrane protein LapE rbh
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
04302015_16_scaffold_1_6
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14191..15162)
DNA (972bp) protein (324aa)
Signal transduction histidine kinase-like protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SIR0_METPP
signal transduction histidine kinase-like protein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
04302015_16_scaffold_1_7
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15326..15721)
DNA (396bp) protein (132aa)
Putative translation initiation inhibitor, yjgF family n=1 Tax=Polaromonas sp. CF318 RepID=J2KJR8_9BURK
Putative translation initiation inhibitor, yjgF family {ECO:0000313|EMBL:EJL80425.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
endoribonuclease L-PSP
04302015_16_scaffold_1_8
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15718..16161)
DNA (444bp) protein (148aa)
thioesterase superfamily protein; K01075 4-hydroxybenzoyl-CoA thioesterase [EC:3.1.2.23]
Thioesterase superfamily protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VTE0_POLNA
Thioesterase superfamily protein {ECO:0000313|EMBL:ABM38918.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
04302015_16_scaffold_1_9
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16169..17794)
DNA (1626bp) protein (542aa)
benzoate-CoA ligase family; K08295 2-aminobenzoate-CoA ligase [EC:6.2.1.32] rbh
Benzoate-CoA ligase family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12FZ3_POLSJ rbh
Benzoate-CoA ligase family {ECO:0000313|EMBL:ABE42549.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
04302015_16_scaffold_1_10
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17791..18960)
DNA (1170bp) protein (390aa)
acyl-CoA dehydrogenase domain-containing protein; K00249 acyl-CoA dehydrogenase [EC:1.3.99.3] rbh
Acyl-CoA dehydrogenase n=1 Tax=Polaromonas sp. CF318 RepID=J2TXU9_9BURK rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EJL83632.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
04302015_16_scaffold_1_11
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18962..19816)
DNA (855bp) protein (285aa)
enoyl-CoA hydratase (EC:4.2.1.17) rbh
Enoyl-CoA hydratase {ECO:0000313|EMBL:ABM38915.1}; EC=4.2.1.17 {ECO:0000313|EMBL:ABM38915.1};; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
Enoyl-CoA hydratase n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VTD7_POLNA rbh
04302015_16_scaffold_1_12
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19813..20295)
DNA (483bp) protein (161aa)
Transcriptional regulator, MarR family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12FZ0_POLSJ
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ABE42552.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
04302015_16_scaffold_1_13
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20354..22654)
DNA (2301bp) protein (767aa)
salicylyl-CoA 5-hydroxylase; K09461 anthraniloyl-CoA monooxygenase [EC:1.14.13.40] rbh
NADH:flavin oxidoreductase n=1 Tax=Polaromonas sp. CF318 RepID=J3D2Z2_9BURK rbh
NADH:flavin oxidoreductase {ECO:0000313|EMBL:EJL83629.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
04302015_16_scaffold_1_14
unknown

Not on your lists

22741..22902
DNA (162bp) protein (54aa)

This feature has no annotations

04302015_16_scaffold_1_15
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22899..23645)
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12FY8_POLSJ rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABE42554.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
04302015_16_scaffold_1_16
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23757..24056
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. CF318 RepID=J2TXU4_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL83627.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
hypothetical protein
04302015_16_scaffold_1_17
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24196..25203)
DNA (1008bp) protein (336aa)
Uncharacterized protein UPF0065 n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12FY6_POLSJ rbh
hypothetical protein rbh
Tax=GWA2_Curvibacter_64_110_curated
04302015_16_scaffold_1_18
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25353..26336)
DNA (984bp) protein (328aa)
Uncharacterized protein UPF0065 n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12FY5_POLSJ rbh
hypothetical protein rbh
Uncharacterized protein UPF0065 {ECO:0000313|EMBL:ABE42557.1}; Flags: Precursor;; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
04302015_16_scaffold_1_19
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26603..27850)
DNA (1248bp) protein (416aa)
phenylacetate-coenzyme A ligase; K01912 phenylacetate-CoA ligase [EC:6.2.1.30] rbh
Phenylacetate-coenzyme A ligase (Phenylacetyl-CoA ligase)-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y063_RAMTT rbh
Phenylacetate-coenzyme A ligase (Phenylacetyl-CoA ligase)-like protein {ECO:0000313|EMBL:AEG94612.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
04302015_16_scaffold_1_20
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28064..28885)
DNA (822bp) protein (274aa)
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12FY3_POLSJ rbh
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein rbh
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
04302015_16_scaffold_1_21
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29011..30339)
DNA (1329bp) protein (443aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. CF318 RepID=J3CXS7_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL80431.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
hypothetical protein; K01999 branched-chain amino acid transport system substrate-binding protein rbh
04302015_16_scaffold_1_22
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30453..31529)
DNA (1077bp) protein (359aa)
ABC transporter permease n=1 Tax=Acidovorax radicis RepID=UPI00023770F6 rbh
ABC-type branched-chain amino acid transport system, permease component {ECO:0000313|EMBL:EJL80432.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein rbh
04302015_16_scaffold_1_23
R_Burkholderiales_61_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31656..32585)
DNA (930bp) protein (310aa)
Amino acid/amide ABC transporter membrane protein 1, HAAT family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12FY0_POLSJ rbh
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein rbh
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_61_11_curated
04302015_16_scaffold_1_24
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32712..33491)
DNA (780bp) protein (260aa)
ABC-type branched-chain amino acid transport system, ATPase component n=1 Tax=Polaromonas sp. CF318 RepID=J3CXD7_9BURK rbh
ABC transporter-like protein; K01995 branched-chain amino acid transport system ATP-binding protein rbh
ABC-type branched-chain amino acid transport system, ATPase component {ECO:0000313|EMBL:EJL80434.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
04302015_16_scaffold_1_25
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33488..35434)
DNA (1947bp) protein (649aa)
AMP-dependent synthetase and ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3] rbh
AMP-forming long-chain acyl-CoA synthetase n=1 Tax=Polaromonas sp. CF318 RepID=J3CR49_9BURK rbh
AMP-forming long-chain acyl-CoA synthetase {ECO:0000313|EMBL:EJL76849.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
04302015_16_scaffold_1_26
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35594..36793)
DNA (1200bp) protein (400aa)
ABC-type branched-chain amino acid transport system, periplasmic component n=1 Tax=Polaromonas sp. CF318 RepID=J2K9C2_9BURK rbh
ABC-type branched-chain amino acid transport system, periplasmic component {ECO:0000313|EMBL:EJL76850.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
extracellular ligand-binding receptor rbh
04302015_16_scaffold_1_27
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36937..37647
DNA (711bp) protein (237aa)
Transcriptional regulator, Crp/Fnr family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12FX7_POLSJ rbh
Crp/FNR family transcriptional regulator rbh
Transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:ABE42565.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
04302015_16_scaffold_1_28
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37825..38619
DNA (795bp) protein (265aa)
ribosomal large subunit pseudouridine synthase F (EC:5.4.99.-); K06182 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] rbh
Pseudouridine synthase family protein n=1 Tax=Polaromonas sp. CF318 RepID=J2U615_9BURK rbh
Pseudouridine synthase family protein {ECO:0000313|EMBL:EJL86572.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
04302015_16_scaffold_1_29
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38713..40077
DNA (1365bp) protein (455aa)
PGAP1-like protein n=1 Tax=Polaromonas sp. CF318 RepID=J3D812_9BURK rbh
PGAP1-like protein {ECO:0000313|EMBL:EJL86569.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
PGAP1 family protein rbh
04302015_16_scaffold_1_30
unknown

Not on your lists

40179..40568
DNA (390bp) protein (130aa)

This feature has no annotations

Displaying items 1-30 of 519 in total

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