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04302015_16_scaffold_87

Search features with annotation key words

Displaying items 1-30 of 263 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_16_scaffold_87_1
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..689)
DNA (687bp) protein (229aa)
Periplasmic Sensor Signal Transduction Histidine Kinase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SF70_THIDA
periplasmic sensor signal transduction histidine kinase
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
04302015_16_scaffold_87_2
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(686..1351)
DNA (666bp) protein (222aa)
Two component Transcriptional regulator, Winged helix family n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SF71_THIDA
two component transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
04302015_16_scaffold_87_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1461..3248
DNA (1788bp) protein (596aa)
thiol:disulfide interchange protein DsbD (EC:1.8.1.8); K04084 thiol:disulfide interchange protein DsbD [EC:1.8.1.8]
Thiol:disulfide interchange protein DsbD {ECO:0000256|HAMAP-Rule:MF_00399}; EC=1.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00399};; Protein-disulfide reductase {ECO:0000256|HAMAP-Rule:MF_00399}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Thiol:disulfide interchange protein DsbD n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SF72_THIDA
04302015_16_scaffold_87_4
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3249..4085
DNA (837bp) protein (279aa)
Putative thiol:disulfide interchange protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21W79_RHOFD
Thiol:disulfide interchange protein {ECO:0000313|EMBL:GAO35042.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
putative thiol:disulfide interchange protein
04302015_16_scaffold_87_5
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4093..4860
DNA (768bp) protein (256aa)
Thiol:disulfide interchange protein DsbG n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SF75_THIDA
Dihydroneopterin aldolase {ECO:0000313|EMBL:GAO35043.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
dsbG; disulfide isomerase/thiol-disulfide oxidase; K03805 thiol:disulfide interchange protein DsbG
04302015_16_scaffold_87_6
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4881..5390
DNA (510bp) protein (170aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BSJ3_9BURK
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
04302015_16_scaffold_87_7
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5452..5763
DNA (312bp) protein (104aa)
Integrase catalytic region protein n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KY35_9BURK
Integrase catalytic region protein {ECO:0000313|EMBL:EGI75304.1}; TaxID=887062 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis ATCC 19624.;"
putative transposase
04302015_16_scaffold_87_8
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5741..7378)
DNA (1638bp) protein (546aa)
Bilirubin oxidase (EC:1.3.3.5); K08100 bilirubin oxidase [EC:1.3.3.5]
Bilirubin oxidase {ECO:0000313|EMBL:ABM39790.1}; EC=1.3.3.5 {ECO:0000313|EMBL:ABM39790.1};; Flags: Precursor;; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
Bilirubin oxidase n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VVW2_POLNA
04302015_16_scaffold_87_9
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7611..8123)
DNA (513bp) protein (171aa)
Blue (Type 1) copper domain n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q126Z7_POLSJ
blue (type1) copper domain-containing protein
Blue (Type 1) copper domain {ECO:0000313|EMBL:ABE45395.1}; Flags: Precursor;; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
04302015_16_scaffold_87_10
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8496..9932)
DNA (1437bp) protein (479aa)
heavy metal sensor signal transduction histidine kinase; K07644 two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3] rbh
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
Heavy metal sensor signal transduction histidine kinase n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VW01_POLNA rbh
04302015_16_scaffold_87_11
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9929..10609)
DNA (681bp) protein (227aa)
Two component heavy metal response transcriptional regulator, winged helix family n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VW02_POLNA rbh
DNA-binding heavy metal response regulator {ECO:0000313|EMBL:CDS53420.1}; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
two component heavy metal response transcriptional regulator; K07665 two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR rbh
04302015_16_scaffold_87_12
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10656..11075
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VW03_POLNA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM39831.1}; Flags: Precursor;; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
04302015_16_scaffold_87_13
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11144..11491
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VW04_POLNA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM39832.1}; Flags: Precursor;; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
04302015_16_scaffold_87_14
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11566..11703
DNA (138bp) protein (46aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q121W8_POLSJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE46674.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
04302015_16_scaffold_87_15
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11976..13064)
DNA (1089bp) protein (363aa)
ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing n=1 Tax=Pseudomonas sp. GM79 RepID=J2WUP6_9PSED rbh
ATP-dependent exonuclease {ECO:0000313|EMBL:KGH08225.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
hypothetical protein rbh
04302015_16_scaffold_87_16
Xenorhabdus bovienii, Xenorhabdus, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13057..14658)
DNA (1602bp) protein (534aa)
Conjugative transposon DNA recombination protein n=1 Tax=Pseudomonas syringae pv. actinidiae ICMP 19073 RepID=S6K8R3_PSESF rbh
SMC domain-containing protein {ECO:0000313|EMBL:CDH02820.1}; TaxID=1398200 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Xenorhabdus.;" source="Xenorhabdus bovienii str. feltiae Moldova.;"
conjugative transposon DNA recombination protein rbh
04302015_16_scaffold_87_17
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14829..15440)
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Achromobacter piechaudii ATCC 43553 RepID=D4XCI9_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EFF75500.1}; TaxID=742159 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii ATCC 43553.;"
04302015_16_scaffold_87_18
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15492..16439)
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Achromobacter piechaudii ATCC 43553 RepID=D4XCI8_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EFF75499.1}; TaxID=742159 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii ATCC 43553.;"
04302015_16_scaffold_87_19
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16659..16904
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q120K0_POLSJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE47042.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
04302015_16_scaffold_87_20
R_Proteobacteria_53_8, Proteobacteria, Bacteria

Not on your lists

comp(16980..17525)
DNA (546bp) protein (182aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00038218F9
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Proteobacteria_53_8_curated
04302015_16_scaffold_87_21
unknown

Not on your lists

comp(17522..17737)
DNA (216bp) protein (72aa)

This feature has no annotations

04302015_16_scaffold_87_22
alpha proteobacterium Q-1, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18512..18913
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Robiginitomaculum antarcticum RepID=UPI0003711BC8
NC domain protein {ECO:0000313|EMBL:GAK32146.1}; TaxID=1492281 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium Q-1.;"
04302015_16_scaffold_87_23
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19545..20549)
DNA (1005bp) protein (335aa)
Dienelactone hydrolase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T899_ACIDE rbh
Dienelactone hydrolase {ECO:0000313|EMBL:KJA09223.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
dienelactone hydrolase rbh
04302015_16_scaffold_87_24
unknown

Not on your lists

comp(21194..21370)
DNA (177bp) protein (59aa)

This feature has no annotations

04302015_16_scaffold_87_25
unknown

Not on your lists

comp(21383..21640)
DNA (258bp) protein (86aa)

This feature has no annotations

04302015_16_scaffold_87_26
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22355..23887
DNA (1533bp) protein (511aa)
Transcriptional regulatory protein ZraR n=1 Tax=Betaproteobacteria bacterium MOLA814 RepID=V5AGK8_9PROT rbh
sigma-54 factor interaction domain-containing protein
Tax=CG_Rhodof_02
04302015_16_scaffold_87_27
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23995..27369
DNA (3375bp) protein (1125aa)
type III restriction enzyme, res subunit; K01153 type I restriction enzyme, R subunit [EC:3.1.21.3] rbh
Putative type I restriction enzyme R protein n=1 Tax=Methyloversatilis universalis FAM5 RepID=F5RCF3_9RHOO rbh
Putative type I restriction enzyme R protein {ECO:0000313|EMBL:EGK71736.1}; TaxID=1000565 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 /; FAM5).;"
04302015_16_scaffold_87_28
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27518..29059
DNA (1542bp) protein (514aa)
N-6 DNA methylase; K03427 type I restriction enzyme M protein [EC:2.1.1.72] rbh
DNA methyltransferase n=1 Tax=Duganella zoogloeoides RepID=UPI0003755557 rbh
N-6 DNA Methylase family protein {ECO:0000313|EMBL:EGK71735.1}; TaxID=1000565 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 /; FAM5).;"
04302015_16_scaffold_87_29
BJP_08E140C01_Elusimicrobia_64_11, Elusimicrobia lineage IV, Elusimicrobia, Bacteria

Not on your lists

29059..30153
DNA (1095bp) protein (365aa)
restriction modification system DNA specificity domain-containing protein; K01154 type I restriction enzyme, S subunit [EC:3.1.21.3]
Type I restriction modification DNA specificity domain protein n=1 Tax=Leptospira meyeri serovar Semaranga str. Veldrot Semarang 173 RepID=M6CKA3_LEPME
Tax=BJP_08E140C01_Elusimicrobia_64_11
04302015_16_scaffold_87_30
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30182..32128
DNA (1947bp) protein (649aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q024S1_SOLUE rbh
hypothetical protein rbh
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
Displaying items 1-30 of 263 in total

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