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04302015_16_scaffold_570

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_16_scaffold_570_1
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..905)
DNA (903bp) protein (301aa)
hypothetical protein n=1 Tax=Thiomicrospira halophila RepID=UPI000365F89D
major facilitator superfamily transport protein
Major facilitator superfamily transport protein {ECO:0000313|EMBL:AEG30966.1}; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1).;"
04302015_16_scaffold_570_2
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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1164..1709
DNA (546bp) protein (182aa)
Lipoprotein n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6D9K3_THICA
lipoprotein
Uncharacterized protein {ECO:0000313|EMBL:AHF00541.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
04302015_16_scaffold_570_3
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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1710..2207
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6D9K2_THICA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG30959.1}; Flags: Precursor;; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1).;"
04302015_16_scaffold_570_4
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2204..2584)
DNA (381bp) protein (127aa)
Putative uncharacterized protein n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DCJ7_9GAMM
DNA-binding protein {ECO:0000313|EMBL:AHF01858.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
hypothetical protein
04302015_16_scaffold_570_5
BJP_S1_SUB10_Methylophilales_55_32, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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2746..3681
DNA (936bp) protein (312aa)
hypothetical protein n=1 Tax=Moritella dasanensis RepID=UPI0003179DC6
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
Tax=BJP_S1_SUB10_Methylophilales_55_32
04302015_16_scaffold_570_6
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3750..5930)
DNA (2181bp) protein (727aa)
(p)ppGpp synthetase I SpoT/RelA (EC:2.7.6.5) rbh
(P)ppGpp synthetase I, SpoT/RelA n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D966_9GAMM rbh
Bifunctional (P)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase {ECO:0000313|EMBL:AHF00391.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
04302015_16_scaffold_570_7
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5939..6163)
DNA (225bp) protein (75aa)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydroge
DNA-directed RNA polymerase subunit omega; K03060 DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
DNA-directed RNA polymerase subunit omega n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D965_9GAMM
04302015_16_scaffold_570_8
unknown

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6437..6745
DNA (309bp) protein (103aa)

This feature has no annotations

04302015_16_scaffold_570_9
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6708..8867
DNA (2160bp) protein (720aa)
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI00037DCBD8
Uncharacterized protein {ECO:0000313|EMBL:KDN95917.1}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
methyl-accepting chemotaxis sensory transducer; K03406 methyl-accepting chemotaxis protein
04302015_16_scaffold_570_10
Bermanella marisrubri, Bermanella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8931..9542)
DNA (612bp) protein (204aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=207949 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Bermanella.;" source="Bermanella marisrubri.;"
gmk; guanylate kinase (EC:2.7.4.8); K00942 guanylate kinase [EC:2.7.4.8]
Guanylate kinase n=1 Tax=Bermanella marisrubri RepID=Q1N440_9GAMM
04302015_16_scaffold_570_11
Pseudomonas sp. Lz4W, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9600..10151
DNA (552bp) protein (184aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=1206777 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Lz4W.;"
aroK; shikimate kinase; K00891 shikimate kinase [EC:2.7.1.71]
Shikimate kinase n=1 Tax=Pseudomonas sp. Lz4W RepID=M5R3C0_9PSED
04302015_16_scaffold_570_12
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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10151..11266
DNA (1116bp) protein (372aa)
3-dehydroquinate synthase (EC:4.2.3.4); K01735 3-dehydroquinate synthase [EC:4.2.3.4] rbh
3-dehydroquinate synthase {ECO:0000255|HAMAP-Rule:MF_00110}; EC=4.2.3.4 {ECO:0000255|HAMAP-Rule:MF_00110};; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
3-dehydroquinate synthase n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=AROB_THICR rbh
04302015_16_scaffold_570_13
unknown

Not on your lists

11282..11899
DNA (618bp) protein (206aa)
hypothetical protein; K09124 hypothetical protein
04302015_16_scaffold_570_14
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12086..14011
DNA (1926bp) protein (642aa)
Putative Methyl-accepting chemotaxis sensory transducer n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F672_9PROT rbh
Putative Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:CDL00944.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
methyl-accepting chemotaxis protein rbh
04302015_16_scaffold_570_15
Nitrincola lacisaponensis, Nitrincola, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14008..15042
DNA (1035bp) protein (345aa)
Chemotaxis response regulator protein-glutamate methylesterase {ECO:0000256|HAMAP-Rule:MF_00099}; EC=3.1.1.61 {ECO:0000256|HAMAP-Rule:MF_00099};; TaxID=267850 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Nitrincola.;" source="Nitrincola lacisaponensis.;"
chemotaxis protein CheB (EC:3.1.1.61); K03412 two-component system, chemotaxis family, response regulator CheB [EC:3.1.1.61] rbh
Chemotaxis response regulator protein-glutamate methylesterase n=1 Tax=Halomonas boliviensis LC1 RepID=G9E8P9_9GAMM rbh
04302015_16_scaffold_570_16
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15051..16505
DNA (1455bp) protein (485aa)
methylase of chemotaxis methyl-accepting protein; K00575 chemotaxis protein methyltransferase CheR [EC:2.1.1.80] rbh
Uncharacterized protein n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F6E5_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:CDL00942.1}; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
04302015_16_scaffold_570_17
Magnetospirillum magneticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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16495..18690
DNA (2196bp) protein (732aa)
gliding motility regulatory protein; K03407 two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] rbh
Gliding motility regulatory protein n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W2W7_MAGSA rbh
Gliding motility regulatory protein {ECO:0000313|EMBL:BAE51808.1}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
04302015_16_scaffold_570_18
Nitrincola lacisaponensis, Nitrincola, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18718..19089
DNA (372bp) protein (124aa)
response regulator n=1 Tax=Pseudomonas caeni RepID=UPI0003B55B0C
Chemotaxis regulator-transmits chemoreceptor signals to flagelllar motor components CheY {ECO:0000313|EMBL:KDE40071.1}; TaxID=267850 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Nitrincola.;" source="Nitrincola lacisaponensis.;"
response regulator receiver protein
04302015_16_scaffold_570_19
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19089..20792
DNA (1704bp) protein (568aa)
Putative Response regulator PleD {ECO:0000313|EMBL:CDL00939.1}; EC=2.7.7.65 {ECO:0000313|EMBL:CDL00939.1};; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
Putative Response regulator PleD n=1 Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F668_9PROT rbh
response regulator containing a CheY-like receiver domain and a GGDEF domain rbh
04302015_16_scaffold_570_20
Nitrincola sp. A-D6, Nitrincola, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20801..21361
DNA (561bp) protein (187aa)
chemotaxis protein n=1 Tax=Pseudomonas caeni RepID=UPI0003B3B153
Uncharacterized protein {ECO:0000313|EMBL:KGK42412.1}; TaxID=1545442 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Nitrincola.;" source="Nitrincola sp. A-D6.;"
CheW protein; K03408 purine-binding chemotaxis protein CheW
04302015_16_scaffold_570_21
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21664..22704
DNA (1041bp) protein (347aa)
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=1163617 species="Bacteria; Pr
Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B510_9PROT
rimO; hypothetical protein
Displaying 21 items

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