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04302015_16_scaffold_785

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_16_scaffold_785_1
Acetobacter aceti, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..657
DNA (657bp) protein (219aa)
Ribosomal RNA large subunit methyltransferase J {ECO:0000256|HAMAP-Rule:MF_00934}; EC=2.1.1.266 {ECO:0000256|HAMAP-Rule:MF_00934};; 23S rRNA (adenine(2030)-N6)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; 23S rRNA m6A2030 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; TaxID=1457393 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter; Acetobacter subgen. Acetobacter.;" source="Acetobacter aceti 1023.;"
lactate dehydrogenase n=1 Tax=Acetobacter pasteurianus RepID=UPI0002D831A6
hypothetical protein; K07115
04302015_16_scaffold_785_2
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(703..1563)
DNA (861bp) protein (287aa)
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI0003791ACD
Flagellin {ECO:0000313|EMBL:AHF01583.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
flagellin-like protein; K02406 flagellin
04302015_16_scaffold_785_3
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1747..2667
DNA (921bp) protein (307aa)
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI00035D76D8 rbh
bile acid:sodium symporter; K03453 bile acid:Na+ symporter, BASS family rbh
Bile acid:Na+ symporter (BASS) family transporter {ECO:0000313|EMBL:ABB41814.1}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
04302015_16_scaffold_785_4
Aquitalea magnusonii, Aquitalea, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2672..4135)
DNA (1464bp) protein (488aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI00036C151C
UPF0061 protein VI06_12325 {ECO:0000256|HAMAP-Rule:MF_00692}; TaxID=332411 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Aquitalea.;" source="Aquitalea magnusonii.;"
hypothetical protein
04302015_16_scaffold_785_5
RLO_Sulfurimonas_36_12, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

4268..5365
DNA (1098bp) protein (366aa)
Prokaryotic ATPase n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NKP3_9DELT rbh
ATPase rbh
Tax=RifCSPlowO2_12_Sulfurimonas_36_12_curated
04302015_16_scaffold_785_6
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5509..6687)
DNA (1179bp) protein (393aa)
flavohemoglobin; K05916 nitric oxide dioxygenase [EC:1.14.12.17]
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI00035E6D7F
Flavohemoglobin {ECO:0000313|EMBL:KDN96794.1}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
04302015_16_scaffold_785_7
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6813..7256
DNA (444bp) protein (148aa)
Transcriptional regulator, BadM/Rrf2 family n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31HI9_THICR
BadM/Rrf2 family transcriptional regulator
Transcriptional regulator, BadM/Rrf2 family {ECO:0000313|EMBL:ABB41384.1}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
04302015_16_scaffold_785_8
Sedimenticola sp. SIP-G1, Sedimenticola, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7312..8037
DNA (726bp) protein (242aa)
hypothetical protein n=1 Tax=Thiomicrospira halophila RepID=UPI00037A7ABF
CBS domain-containing protein {ECO:0000313|EMBL:AKH22345.1}; TaxID=1543721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Sedimenticola.;" source="Sedimenticola sp. SIP-G1.;"
HPP family protein
04302015_16_scaffold_785_9
unknown

Not on your lists

8109..8267
DNA (159bp) protein (53aa)

This feature has no annotations

04302015_16_scaffold_785_10
delta proteobacterium MLMS-1, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8694..8915)
DNA (222bp) protein (74aa)
Helix-turn-helix motif n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NR99_9DELT
Helix-turn-helix motif {ECO:0000313|EMBL:EAT04217.1}; TaxID=262489 species="Bacteria; Proteobacteria; Deltaproteobacteria.;" source="delta proteobacterium MLMS-1.;"
04302015_16_scaffold_785_11
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8986..9402)
DNA (417bp) protein (139aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
recombinase n=1 Tax=Ralstonia solanacearum RepID=UPI00031F2D8B
plasmid stability protein StbB; K07062
04302015_16_scaffold_785_12
CG_Rhodof_02, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9399..9644)
DNA (246bp) protein (82aa)
Prevent-host-death family protein n=1 Tax=Thauera sp. 28 RepID=N6YMF9_9RHOO
prevent-host-death family protein
Tax=CG_Rhodof_02
04302015_16_scaffold_785_13
Pseudomonas tuomuerensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9778..10593
DNA (816bp) protein (272aa)
NADPH-dependent 7-cyano-7-deazaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00817, ECO:0000256|SAAS:SAAS00037296}; EC=1.7.1.13 {ECO:0000256|HAMAP-Rule:MF_00817, ECO:0000256|SAAS:SAAS00001352};; 7-cyano-7-carbaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00817}; NADPH-dependent nitrile oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00817}; PreQ(0) reductase {ECO:0000256|HAMAP-Rule:MF_00817}; TaxID=400095 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" sour
queF; 7-cyano-7-deazaguanine reductase; K06879 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
7-cyano-7-deazaguanine reductase n=1 Tax=Vibrio gazogenes RepID=UPI000393F8C3
04302015_16_scaffold_785_14
Catenovulum agarivorans, Catenovulum, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10648..11223
DNA (576bp) protein (192aa)
UPF0301 protein Shewmr4_1199 n=4 Tax=Shewanella RepID=Y1199_SHESM
UPF0301 protein DS2_05740 {ECO:0000256|HAMAP-Rule:MF_00758}; TaxID=1328313 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Catenovulum.;" source="Catenovulum agarivorans DS-2.;"
hypothetical protein; K07735 putative transcriptional regulator
04302015_16_scaffold_785_15
gamma proteobacterium IMCC2047, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11227..11661
DNA (435bp) protein (145aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=434085 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium IMCC2047.;"
Putative Holliday junction resolvase n=1 Tax=gamma proteobacterium IMCC2047 RepID=F3KHR5_9GAMM
Holliday junction resolvase-like protein
04302015_16_scaffold_785_16
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11672..12457
DNA (786bp) protein (262aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
aspartate carbamoyltransferase (EC:2.1.3.2); K00609 aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
Aspartate carbamoyltransferase n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D9I3_9GAMM
Displaying 16 items

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