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04302015_20_scaffold_424

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_20_scaffold_424_1
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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74..1366
DNA (1293bp) protein (431aa)
Intracellular PHB depolymerase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CUF8_THIA3 rbh
phaZre; Intracellular PHB depolymerase rbh
Intracellular PHB depolymerase {ECO:0000313|EMBL:CAZ88927.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
04302015_20_scaffold_424_2
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1379..2011
DNA (633bp) protein (211aa)
Putative Electron transport complex, RnfABCDGE type, B subunit (RnfB) n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CUF9_THIA3 rbh
Putative Electron transport complex, RnfABCDGE type, B subunit (RnfB) {ECO:0000313|EMBL:CDW95100.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
Putative Electron transport complex, RnfABCDGE type, B subunit (RnfB) rbh
04302015_20_scaffold_424_3
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2041..2460
DNA (420bp) protein (140aa)
putative GTP cyclohydrolase I (EC:3.5.4.16)
NADPH-dependent 7-cyano-7-deazaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00184002}; EC=1.7.1.13 {ECO:0000256|HAMAP-Rule:MF_00818, ECO:0000256|SAAS:SAAS00001352};; 7-cyano-7-carbaguanine reductase {ECO:0000256|HAMAP-Rule:MF_00818}; NADPH-dependent nitrile oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00818}; PreQ(0) reductase {ECO:0000256|HAMAP-Rule:MF_00818}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2
NADPH-dependent 7-cyano-7-deazaguanine reductase n=2 Tax=Thiomonas RepID=D6CUG0_THIA3
04302015_20_scaffold_424_4
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2481..3581)
DNA (1101bp) protein (367aa)
Putative Soluble quinoprotein glucose dehydrogenase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CUG1_THIA3 rbh
Putative Soluble quinoprotein glucose dehydrogenase {ECO:0000313|EMBL:CDW95098.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
putative Soluble quinoprotein glucose dehydrogenase rbh
04302015_20_scaffold_424_5
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3666..4277)
DNA (612bp) protein (204aa)
Recombination protein RecR n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CUG2_THIA3 rbh
recR; Recombination protein recR rbh
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
04302015_20_scaffold_424_6
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4329..4658)
DNA (330bp) protein (110aa)
Nucleoid-associated protein Tint_1855 n=2 Tax=Thiomonas RepID=D5X277_THIK1
Nucleoid-associated protein ybaB {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
conserved hypothetical protein ybaB
04302015_20_scaffold_424_7
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4718..6568)
DNA (1851bp) protein (617aa)
DNA polymerase III subunits gamma and tau; K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7] rbh
DNA polymerase III, subunits gamma and tau n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X278_THIK1 rbh
DNA polymerase III, subunits gamma and tau {ECO:0000313|EMBL:ADG31224.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
04302015_20_scaffold_424_8
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6859..7800
DNA (942bp) protein (314aa)
Putative alpha/beta-Hydrolase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CUG5_THIA3 rbh
putative alpha/beta-Hydrolase rbh
Alpha/beta hydrolase fold-3 domain protein {ECO:0000313|EMBL:CDW95089.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
04302015_20_scaffold_424_9
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7950..8051)
DNA (102bp) protein (34aa)
Uncharacterized protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CUG6_THIA3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG31226.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
04302015_20_scaffold_424_10
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8089..11748)
DNA (3660bp) protein (1220aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X281_THIK1 rbh
Uncharacterized protein {ECO:0000313|EMBL:CDW95086.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
hypothetical protein rbh
04302015_20_scaffold_424_11
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11773..12081
DNA (309bp) protein (103aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X282_THIK1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG31228.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
04302015_20_scaffold_424_12
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12078..12734
DNA (657bp) protein (219aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X283_THIK1 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADG31229.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
04302015_20_scaffold_424_13
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12853..13533)
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CUH0_THIA3 rbh
Uncharacterized protein {ECO:0000313|EMBL:CDW95080.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
conserved hypothetical protein yhhQ; putative membrane protein rbh
04302015_20_scaffold_424_14
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


13787..16654
DNA (2868bp) protein (956aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
valS; Valyl-tRNA synthetase (Valine--tRNA ligase) (ValRS) (EC:6.1.1.9) rbh
Valine--tRNA ligase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CUH2_THIA3 rbh
04302015_20_scaffold_424_15
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16890..17222)
DNA (333bp) protein (111aa)
Histone family protein DNA-binding protein n=2 Tax=Thiomonas RepID=D5X287_THIK1
himD; Integration host factor subunit beta (IHF-beta)
Integration host factor subunit beta (IHF-beta) {ECO:0000313|EMBL:CAZ88942.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
04302015_20_scaffold_424_16
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(17370..19073)
DNA (1704bp) protein (568aa)
30S ribosomal protein S1 n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CUH4_THIA3 rbh
30S ribosomal subunit protein S1 {ECO:0000313|EMBL:CDW95074.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
rpsA; 30S ribosomal protein S1 rbh
04302015_20_scaffold_424_17
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19148..21124)
DNA (1977bp) protein (659aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|RuleBase:RU000531, ECO:0000256|SAAS:SAAS00240549}; EC=2.5.1.19 {ECO:0000256|RuleBase:RU000531, ECO:0000256|SAAS:SAAS00240533};; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19 2.7.4.14); K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] rbh
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X289_THIK1 rbh
04302015_20_scaffold_424_18
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21114..22028)
DNA (915bp) protein (305aa)
Putative prephenate dehydrogenase (EC:1.3.1.12) rbh
Putative prephenate dehydrogenase {ECO:0000313|EMBL:CAZ88945.1}; EC=1.3.1.12 {ECO:0000313|EMBL:CAZ88945.1};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
Prephenate dehydrogenase n=2 Tax=Thiomonas RepID=D5X290_THIK1 rbh
04302015_20_scaffold_424_19
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22033..23163)
DNA (1131bp) protein (377aa)
histidinol-phosphate aminotransferase; K00817 histidinol-phosphate aminotransferase [EC:2.6.1.9] rbh
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
Histidinol-phosphate aminotransferase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X291_THIK1 rbh
04302015_20_scaffold_424_20
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23194..24291)
DNA (1098bp) protein (366aa)
pheA; P-protein [Includes: Chorismate mutase (CM); Prephenate dehydratase (PDT)] (EC:4.2.1.51 5.4.99.5) rbh
P-protein {ECO:0000313|EMBL:CAZ88947.1}; EC=4.2.1.51 {ECO:0000313|EMBL:CAZ88947.1};; EC=5.4.99.5 {ECO:0000313|EMBL:CAZ88947.1};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
P-protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CUH8_THIA3 rbh
04302015_20_scaffold_424_21
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24298..25401)
DNA (1104bp) protein (368aa)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
serC; Phosphoserine aminotransferase (PSAT) (EC:2.6.1.52) rbh
Phosphoserine aminotransferase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CUH9_THIA3 rbh
04302015_20_scaffold_424_22
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(25408..28014)
DNA (2607bp) protein (869aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
DNA gyrase subunit A (EC:5.99.1.3); K02469 DNA gyrase subunit A [EC:5.99.1.3] rbh
DNA gyrase subunit A n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X294_THIK1 rbh
04302015_20_scaffold_424_23
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28455..29147
DNA (693bp) protein (231aa)
OmpA/MotB domain protein n=2 Tax=Thiomonas RepID=D5X295_THIK1 rbh
putative OmpA/MotB precursor rbh
OmpA/MotB domain protein {ECO:0000313|EMBL:ADG31241.1}; Flags: Precursor;; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
04302015_20_scaffold_424_24
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29322..30389
DNA (1068bp) protein (356aa)
class III aminotransferase; K00822 beta-alanine--pyruvate transaminase [EC:2.6.1.18]
Aminotransferase class-III n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X296_THIK1
Aminotransferase class-III {ECO:0000313|EMBL:ADG31242.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
Displaying 24 items

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