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04302015_20_scaffold_278

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_20_scaffold_278_1
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..324)
DNA (324bp) protein (108aa)
Transposase, mutator type n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FU85_ACICJ
transposase, mutator type
Transposase, mutator type {ECO:0000313|EMBL:ABQ29167.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_20_scaffold_278_2
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

681..2153
DNA (1473bp) protein (491aa)
RNA polymerase factor sigma-54 (EC:2.7.7.6); K03092 RNA polymerase sigma-54 factor rbh
RNA polymerase sigma-54 factor n=1 Tax=Acidiphilium sp. PM RepID=F7SAT6_9PROT rbh
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
04302015_20_scaffold_278_3
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2281..2886
DNA (606bp) protein (202aa)
SSU ribosomal protein S30P / sigma 54 modulation protein n=3 Tax=Acidiphilium RepID=A5G032_ACICJ rbh
sigma-54 modulation protein rbh
SSU ribosomal protein S30P / sigma 54 modulation protein {ECO:0000313|EMBL:ABQ31214.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_20_scaffold_278_4
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3237..4157)
DNA (921bp) protein (307aa)
Type II secretion system protein n=2 Tax=Acidiphilium RepID=F7SAT5_9PROT rbh
putative type II secretion system protein; K12511 tight adherence protein C rbh
Type II secretion system protein {ECO:0000313|EMBL:EGO93756.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
04302015_20_scaffold_278_5
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4159..5112)
DNA (954bp) protein (318aa)
Type II secretion system protein n=3 Tax=Acidiphilium RepID=A5G035_ACICJ rbh
putative type II secretion system protein; K12510 tight adherence protein B rbh
Type II secretion system protein {ECO:0000313|EMBL:ABQ31217.1}; Flags: Precursor;; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_20_scaffold_278_6
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5109..6443)
DNA (1335bp) protein (445aa)
Type II secretion system protein E n=3 Tax=Acidiphilium RepID=A5G036_ACICJ rbh
putative type II secretion system protein; K02283 pilus assembly protein CpaF rbh
Type II secretion system protein E {ECO:0000313|EMBL:ABQ31218.1}; Flags: Precursor;; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_20_scaffold_278_7
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6443..7645)
DNA (1203bp) protein (401aa)
Flp pilus assembly protein ATPase CpaE-like protein n=3 Tax=Acidiphilium RepID=A5G037_ACICJ rbh
Flp pilus assembly protein ATPase CpaE-like protein; K02282 pilus assembly protein CpaE rbh
Flp pilus assembly protein ATPase CpaE-like protein {ECO:0000313|EMBL:ABQ31219.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_20_scaffold_278_8
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7642..8469)
DNA (828bp) protein (276aa)
SAF domain protein n=2 Tax=Acidiphilium RepID=A5G038_ACICJ rbh
putative pilus assembly protein; K02279 pilus assembly protein CpaB rbh
SAF domain protein {ECO:0000313|EMBL:ABQ31220.1}; Flags: Precursor;; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_20_scaffold_278_9
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8631..8837)
DNA (207bp) protein (69aa)
Putative pilin subunit protein n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J0S7_ACIMA
Flp pilus assembly protein, pilin Flp {ECO:0000313|EMBL:KDM66877.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
putative pilin subunit protein; K02651 pilus assembly protein Flp/PilA
04302015_20_scaffold_278_10
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9024..10016)
DNA (993bp) protein (331aa)
PfkB domain protein n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5G040_ACICJ rbh
ribokinase-like domain-containing protein rbh
PfkB domain protein {ECO:0000313|EMBL:KDM66876.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
04302015_20_scaffold_278_11
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10233..10871
DNA (639bp) protein (213aa)
Uncharacterized protein n=3 Tax=Acidiphilium RepID=A5G041_ACICJ
hypothetical protein
Cell shape determination CcmA {ECO:0000313|EMBL:KDM66875.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
04302015_20_scaffold_278_12
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10905..11246
DNA (342bp) protein (114aa)
Uncharacterized protein n=3 Tax=Acidiphilium RepID=A5G042_ACICJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGO93748.1}; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
04302015_20_scaffold_278_13
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11312..12265
DNA (954bp) protein (318aa)
glutathione synthetase (EC:6.3.2.3); K01920 glutathione synthase [EC:6.3.2.3] rbh
Glutathione synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; EC=6.3.2.3 {ECO:0000256|HAMAP-Rule:MF_00162};; GSH synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; Glutathione synthase {ECO:0000256|HAMAP-Rule:MF_00162}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
Glutathione synthetase n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5G043_ACICJ rbh
04302015_20_scaffold_278_14
Acidiphilium sp. PM, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12417..13256)
DNA (840bp) protein (280aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28); K01448 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] rbh
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:EGO93745.1}; EC=3.5.1.28 {ECO:0000313|EMBL:EGO93745.1};; TaxID=1043206 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. PM.;"
N-acetylmuramoyl-L-alanine amidase n=3 Tax=Acidiphilium RepID=A5G045_ACICJ rbh
04302015_20_scaffold_278_15
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13437..13853
DNA (417bp) protein (139aa)
Membrane protein-like protein n=2 Tax=Acidiphilium RepID=A5G046_ACICJ
hypothetical protein
Membrane protein-like protein {ECO:0000313|EMBL:ABQ31228.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_20_scaffold_278_16
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13860..15323)
DNA (1464bp) protein (488aa)
icd; isocitrate dehydrogenase (EC:1.1.1.42); K00031 isocitrate dehydrogenase [EC:1.1.1.42] rbh
Isocitrate dehydrogenase {ECO:0000313|EMBL:BAJ81621.1}; EC=1.1.1.42 {ECO:0000313|EMBL:BAJ81621.1};; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
Isocitrate dehydrogenase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J0T5_ACIMA rbh
04302015_20_scaffold_278_17
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15622..17091
DNA (1470bp) protein (490aa)
Drug resistance transporter, EmrB/QacA subfamily n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5G048_ACICJ rbh
EmrB/QacA family drug resistance transporter; K03446 MFS transporter, DHA2 family, multidrug resistance protein B rbh
Drug resistance transporter, EmrB/QacA subfamily {ECO:0000313|EMBL:ABQ31230.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_20_scaffold_278_18
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17105..17623)
DNA (519bp) protein (173aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12); K01770 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] rbh
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=2 Tax=Acidiphilium RepID=A5G049_ACICJ rbh
04302015_20_scaffold_278_19
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17730..18791
DNA (1062bp) protein (354aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
tRNA-dihydrouridine synthase n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J0T8_ACIMA rbh
dus; putative tRNA-dihydrouridine synthase rbh
04302015_20_scaffold_278_20
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18788..19933
DNA (1146bp) protein (382aa)
ntrB; nitrogen regulation protein NtrB (EC:2.7.13.3); K07708 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] rbh
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
PAS/PAC sensor signal transduction histidine kinase n=3 Tax=Acidiphilium RepID=A5G051_ACICJ rbh
04302015_20_scaffold_278_21
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19930..21393
DNA (1464bp) protein (488aa)
Nitrogen assimilation regulatory protein NtrC n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J0U0_ACIMA rbh
ntrC; nitrogen assimilation regulatory protein NtrC; K07712 two-component system, NtrC family, nitrogen regulation response regulator GlnG rbh
Nitrogen assimilation regulatory protein NtrC {ECO:0000313|EMBL:KDM66865.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
04302015_20_scaffold_278_22
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21401..23623
DNA (2223bp) protein (741aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
ntrY; nitrogen regulation protein NtrY (EC:2.7.13.3); K13598 two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] rbh
Nitrogen regulation protein NtrY n=2 Tax=Acidiphilium RepID=F0J0U1_ACIMA rbh
04302015_20_scaffold_278_23
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23631..25025
DNA (1395bp) protein (465aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Acidiphilium RepID=A5G054_ACICJ rbh
ntrX; nitrogen assimilation regulatory protein NtrX; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX rbh
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:ABQ31236.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
Displaying 23 items

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