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04302015_20_scaffold_239

Search features with annotation key words

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_20_scaffold_239_1
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(352..1272)
DNA (921bp) protein (307aa)
anmK; anhydro-N-acetylmuramic acid kinase (EC:2.7.1.-); K09001 anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170]
Anhydro-N-acetylmuramic acid kinase {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085893}; EC=2.7.1.170 {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085888};; AnhMurNAc kinase {ECO:0000256|HAMAP-Rule:MF_01270}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
Anhydro-N-acetylmuramic acid kinase n=2 Tax=Acidiphilium RepID=F0IX81_ACIMA
04302015_20_scaffold_239_2
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1329..2555
DNA (1227bp) protein (409aa)
tyrosyl-tRNA synthetase (EC:6.1.1.1); K01866 tyrosyl-tRNA synthetase [EC:6.1.1.1]
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00009759}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
Tyrosine--tRNA ligase n=2 Tax=Acidiphilium RepID=A5FWG5_ACICJ
04302015_20_scaffold_239_3
Gluconobacter oxydans, Gluconobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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2552..2980
DNA (429bp) protein (143aa)
SufE protein probably involved in Fe-S center assembly n=1 Tax=Gluconobacter oxydans (strain 621H) RepID=Q5FU95_GLUOX
hypothetical protein; K02426 cysteine desulfuration protein SufE
SufE protein probably involved in Fe-S center assembly {ECO:0000313|EMBL:AAW60051.1}; TaxID=290633 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconobacter.;" source="Gluconobacter oxydans (strain 621H) (Gluconobacter suboxydans).;"
04302015_20_scaffold_239_4
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3215..3676)
DNA (462bp) protein (154aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036778FB
Uncharacterized protein {ECO:0000313|EMBL:EFH10938.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
putative integral membrane protein
04302015_20_scaffold_239_5
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3677..4303)
DNA (627bp) protein (209aa)
Plasmid segregation oscillating ATPase ParF n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FUJ4_ACICJ
cobyrinic acid a,c-diamide synthase; K03496 chromosome partitioning protein
Plasmid segregation oscillating ATPase ParF {ECO:0000313|EMBL:ABQ29276.1}; Flags: Precursor;; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_20_scaffold_239_6
Acidocella aminolytica, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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4372..5787
DNA (1416bp) protein (472aa)
Carbohydrate kinase, YjeF related protein n=2 Tax=Acidiphilium RepID=A5FUJ5_ACICJ
Sugar kinase {ECO:0000313|EMBL:GAN78720.1}; TaxID=1120923 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella aminolytica 101 = DSM 11237.;"
carbohydrate kinase
04302015_20_scaffold_239_7
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5803..8163
DNA (2361bp) protein (787aa)
Pyruvate dehydrogenase E1 component {ECO:0000256|PIRNR:PIRNR000156}; EC=1.2.4.1 {ECO:0000256|PIRNR:PIRNR000156};; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
hypothetical protein; K00163 pyruvate dehydrogenase E1 component [EC:1.2.4.1]
Pyruvate dehydrogenase (Acetyl-transferring) n=1 Tax=Acidiphilium sp. PM RepID=F7SAT8_9PROT
04302015_20_scaffold_239_8
unknown

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comp(8570..9643)
DNA (1074bp) protein (358aa)

This feature has no annotations

04302015_20_scaffold_239_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9844..10623)
DNA (780bp) protein (260aa)
Putative enoyl-CoA hydratase {ECO:0000313|EMBL:CAE27153.1}; EC=4.2.1.17 {ECO:0000313|EMBL:CAE27153.1};; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
Enoyl-CoA hydratase/isomerase n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3Q9G3_RHOPT
Enoyl-CoA hydratase/isomerase
04302015_20_scaffold_239_10
unknown

Not on your lists

comp(10637..10909)
DNA (273bp) protein (91aa)

This feature has no annotations

04302015_20_scaffold_239_11
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10950..13109
DNA (2160bp) protein (720aa)
polynucleotide phosphorylase/polyadenylase (EC:2.7.7.8); K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
Polyribonucleotide nucleotidyltransferase n=3 Tax=Acidiphilium RepID=PNP_ACICJ
04302015_20_scaffold_239_12
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13236..13865
DNA (630bp) protein (210aa)
5'-methylthioadenosine nucleosidase (EC:3.2.2.16 3.2.2.9); K01243 S-adenosylhomocysteine/5'-methylthioadenosine nucleosidase [EC:3.2.2.9]
5'-methylthioadenosine nucleosidase {ECO:0000313|EMBL:ABI63305.1}; EC=3.2.2.16 {ECO:0000313|EMBL:ABI63305.1};; EC=3.2.2.9 {ECO:0000313|EMBL:ABI63305.1};; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
5'-methylthioadenosine nucleosidase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BPE7_GRABC
04302015_20_scaffold_239_13
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13917..15032)
DNA (1116bp) protein (372aa)
Uncharacterized protein n=2 Tax=Acidiphilium RepID=F0J059_ACIMA
radical SAM domain-containing protein
Radical SAM domain protein {ECO:0000313|EMBL:ABQ31033.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_20_scaffold_239_14
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15044..16015)
DNA (972bp) protein (324aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
hydroxymethylbutenyl pyrophosphate reductase (EC:1.17.1.2); K03527 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [EC:1.17.1.2]
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YP59_9PROT
04302015_20_scaffold_239_15
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16356..18299
DNA (1944bp) protein (648aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; Flags: Precursor;; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7); K01662 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
1-deoxy-D-xylulose-5-phosphate synthase n=2 Tax=Acidiphilium RepID=A5FZK3_ACICJ
04302015_20_scaffold_239_16
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18374..19018
DNA (645bp) protein (215aa)
Toluene tolerance family protein n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FZK4_ACICJ
toluene tolerance family protein
Toluene tolerance family protein {ECO:0000313|EMBL:ABQ31036.1}; Flags: Precursor;; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_20_scaffold_239_17
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19122..20252
DNA (1131bp) protein (377aa)
putative glucosyltransferase; K00720 ceramide glucosyltransferase [EC:2.4.1.80]
Cell wall biosynthesis glycosyltransferase-like protein n=1 Tax=Acidiphilium sp. PM RepID=F7S1H8_9PROT
Cell wall biosynthesis glycosyltransferase-like protein {ECO:0000313|EMBL:KDM65645.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
04302015_20_scaffold_239_18
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20249..21688
DNA (1440bp) protein (480aa)
Uncharacterized protein n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J064_ACIMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAJ81424.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
04302015_20_scaffold_239_19
unknown

Not on your lists

comp(21901..22143)
DNA (243bp) protein (81aa)

This feature has no annotations

04302015_20_scaffold_239_20
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22743..24590
DNA (1848bp) protein (616aa)
Uncharacterized protein n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FZK8_ACICJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ31040.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
04302015_20_scaffold_239_21
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25023..25613
DNA (591bp) protein (197aa)
Transcriptional regulator, TetR family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTM6_PARL1
TetR family transcriptional regulator {ECO:0000313|EMBL:GAK45493.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
TetR family transcriptional regulator
04302015_20_scaffold_239_22
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25625..26626)
DNA (1002bp) protein (334aa)
peptide chain release factor 2 n=1 Tax=Gluconacetobacter oboediens RepID=UPI000237DDDF
Peptide chain release factor 2 {ECO:0000256|SAAS:SAAS00090452}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
peptide chain release factor 2; K02836 peptide chain release factor 2
04302015_20_scaffold_239_23
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26801..29464)
DNA (2664bp) protein (888aa)
1A family penicillin-binding protein (EC:2.4.1.129); K05366 penicillin-binding protein 1A [EC:2.4.1.- 3.4.-.-]
Penicillin-binding protein 1A {ECO:0000313|EMBL:KDM67249.1}; EC=2.4.2.- {ECO:0000313|EMBL:KDM67249.1};; EC=3.4.-.- {ECO:0000313|EMBL:KDM67249.1};; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
Penicillin-binding protein, 1A family n=3 Tax=Acidiphilium RepID=A5FZ60_ACICJ
04302015_20_scaffold_239_24
Burkholderia thailandensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29686..30885
DNA (1200bp) protein (400aa)
Putative transmembrane protein n=1 Tax=Burkholderia pseudomallei NCTC 13179 RepID=U5UXG3_BURPE
hypothetical protein
Lipoprotein, putative {ECO:0000313|EMBL:ABC36143.1}; TaxID=271848 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 /; CIP 106301).;"
Displaying 24 items

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